Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0355
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227     64   9e-11
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    30   1.8  
07_01_0436 + 3317334-3317423,3317561-3317908,3317996-3318331,331...    28   7.2  

>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
          Length = 227

 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 27/37 (72%), Positives = 29/37 (78%)
 Frame = +3

Query: 669 IRCARPSDLMNMQHCNLLCLPENYQMKYYFYHGLSWP 779
           IR A   DL+ MQ CNL+CLPENYQMKYY YH LSWP
Sbjct: 4   IRQATIDDLLAMQACNLMCLPENYQMKYYLYHMLSWP 40


>02_01_0689 +
           5137506-5137591,5138641-5138709,5139489-5139580,
           5139967-5140289,5141373-5142479,5142593-5143279,
           5144214-5144522,5145488-5145823,5146165-5146263,
           5146676-5146940,5146950-5147104,5147666-5149723,
           5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -3

Query: 372 RRL*QLKSLPSYLKKHKLTNG*LMTALGYFIKITRTMTTQDKSNIK 235
           R L Q  SLP + + H+L +  +     ++ K T + +T++KS+ K
Sbjct: 128 RDLPQTSSLPKFAENHELGSANIFMDPSFYTKATESSSTENKSSSK 173


>07_01_0436 +
           3317334-3317423,3317561-3317908,3317996-3318331,
           3318384-3318442,3318640-3318709,3319259-3319579
          Length = 407

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -3

Query: 600 AYLTYHLVVLEQIEI--WINSTSKQCTNLEQEQRSLSLNHQHHVNQSQ 463
           AYL      +E++E+  WI++  K  +  + + RSL L+H +++ Q Q
Sbjct: 286 AYLLEIAPFMEKLELHMWIDAPHKPYSEEDGDLRSLPLHHHNNLKQVQ 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,215,839
Number of Sequences: 37544
Number of extensions: 295383
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)