Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0354
         (770 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.22 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.22 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.22 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.88 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.88 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   6.2  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 569 LTDLSRFLALVSKVL--IDDVTSPISTVFNCATFGRSSSV 682
           L  L+ FL LV++ L  + D    + T FNC  F  +SSV
Sbjct: 250 LLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSV 289


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 569 LTDLSRFLALVSKVL--IDDVTSPISTVFNCATFGRSSSV 682
           L  L+ FL LV++ L  + D    + T FNC  F  +SSV
Sbjct: 250 LLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSV 289


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 569 LTDLSRFLALVSKVL--IDDVTSPISTVFNCATFGRSSSV 682
           L  L+ FL LV++ L  + D    + T FNC  F  +SSV
Sbjct: 250 LLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSV 289


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 569 LTDLSRFLALVSKVL--IDDVTSPISTVFNCATFGRSSSV 682
           L  L+ FL LV++ +    D    I T FNC  F  +SSV
Sbjct: 250 LLSLTVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSV 289


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 569 LTDLSRFLALVSKVL--IDDVTSPISTVFNCATFGRSSSV 682
           L  L+ FL LV++ +    D    I T FNC  F  +SSV
Sbjct: 250 LLSLTVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSV 289


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 702 GVAS*RTSPPCPVCYER--ENSLAD 770
           GV S  TSPP P+   R  EN  AD
Sbjct: 126 GVISTNTSPPSPILSNRFGENEEAD 150


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 408 ERAGGHRSRQARGRPGHRTRTQP 340
           E++   RSRQ    PGH   T P
Sbjct: 737 EKSFDSRSRQNSSFPGHGPTTAP 759


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,782
Number of Sequences: 336
Number of extensions: 2757
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)