Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0354
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    30   0.42 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   2.2  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    26   5.2  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   9.1  

>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 28/89 (31%), Positives = 39/89 (43%)
 Frame = +1

Query: 133 LIIKNHVEVLFHWQIFFGGLQ*ILFCISLGG*RKLLDTTFALESHHQNLPAMSSLICLAS 312
           L + + V + F W I FGG       + + G   ++ T   L      LPA  S+   A+
Sbjct: 90  LDVVSGVRLTFSWGISFGGPAAYWSAMLVTGFCSIV-TAACLAEICSALPAAGSIYLWAA 148

Query: 313 VSALSTFGCWLSSSPVARSATCLTTSVAS 399
            SA   FG ++S      S T  TT VAS
Sbjct: 149 ESAGPRFGRFVSFLVAWWSTTAWTTFVAS 177


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 274 NLPAMSSLICLASVSALSTFGCWLSSS-PVARSATCLTT 387
           N PA+SS   L SVS  ST   + SSS  +A S T  +T
Sbjct: 207 NSPAVSSSETLTSVSITSTESAYTSSSVDIAASTTASST 245


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 699 KYISNQTELLRPKVAQLKTVDIGEVTSSIKTLETSAK 589
           KYIS QT+L+   + ++      E  ++++ LET+ K
Sbjct: 388 KYISEQTQLVEEALTKVMKEKYREKENNLELLETNLK 424


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 344 SQQPKVDSALTEARQIRDDIAGKF**CDSKAKVVSSNFL*PPRLIQNKIYCNPPKK 177
           S  P+  S+L+++R+I  +          K    SSN L P   +QN++    P K
Sbjct: 11  SHLPQSSSSLSQSREIAKEFTSNIPPPTIKTNSSSSNILKPRLSLQNEVNQLKPAK 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,761
Number of Sequences: 5004
Number of extensions: 48676
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)