Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0354
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)                34   0.15 
SB_6407| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.78 
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     31   0.78 
SB_27495| Best HMM Match : VWA (HMM E-Value=0)                         31   1.4  
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)                  30   2.4  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09)          29   4.2  
SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    29   5.5  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_29363| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 28   7.3  
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      28   9.6  
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
          Length = 722

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 23/61 (37%), Positives = 32/61 (52%)
 Frame = -3

Query: 744 NKQDKADSFFTTQRLKYISNQTELLRPKVAQLKTVDIGEVTSSIKTLETSAKNLLRSVSL 565
           N Q    S F TQ ++  S Q   +  ++A LKT+ +       +TLE S KNLL+ VS 
Sbjct: 441 NAQQSETSTFKTQLVEQTS-QLHAITQELASLKTL-LETTAKEKETLEVSEKNLLQEVSA 498

Query: 564 L 562
           L
Sbjct: 499 L 499


>SB_6407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 491 AATDSDKQISRAAKLAEDAERTLAAVRESAREATEV--VKHVADLATGLELSQQPKVDSA 318
           A    DK    A+KLA   +  LAA+  +AR A  +    H   +A  L+ S  PKV SA
Sbjct: 136 ATNSGDKNPRLASKLAARCDLDLAALFHTARIADRLWSAMHEVAVAAKLDKSMTPKVSSA 195


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 491 AATDSDKQISRAAKLAEDAERTLAAVRESAREATEV--VKHVADLATGLELSQQPKVDSA 318
           A    DK    A+KLA   +  LAA+  +AR A  +    H   +A  L+ S  PKV SA
Sbjct: 441 ATNSGDKNPRLASKLAARCDLDLAALFHTARIADRLWSAMHEVAVAAKLDKSMTPKVSSA 500


>SB_27495| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1064

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = -1

Query: 446 AEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSALTEARQIRDDIAGKF** 267
           A++ +   A V+E  +E     K+  DL  G+  SQ   + S +T  +Q+   +AG F  
Sbjct: 298 AKNFDELQAKVQEILQEQCTGCKNTLDLVFGIPNSQS--LGSEITNVKQVMSRLAGLFDV 355

Query: 266 CDSKAKV 246
            +SKA +
Sbjct: 356 ANSKAHI 362


>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 465  KSRRET-SGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQ 322
            + RRE+  G+  E     +G +  GH  R+ +GR G + + +   +G Q
Sbjct: 900  RQRRESCKGKGREGGKDHEGHKGNGHGGRKGKGRKGRKDKGRMGRKGHQ 948


>SB_36012| Best HMM Match : DUF755 (HMM E-Value=0.064)
          Length = 265

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = -3

Query: 504 AGGICGD*QRQTNKSRRET-----SGRRGEDISSGQGERAGGHRSRQAR--GRPGHRTRT 346
           +G   GD QR+    +  +     S  R +  S+GQ +R G HR R +     P HR+R+
Sbjct: 151 SGSQSGDRQRERRLHKHSSPSISPSPPRRQKYSNGQSDRKGKHRHRDSSSPSPPRHRSRS 210

Query: 345 QPAAEGRQR 319
            P   G +R
Sbjct: 211 -PFRNGNKR 218


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -3

Query: 477 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEAD 298
           R T+ +   T+  +     +  G+ A G     ++G P     ++PA  GR  T R  + 
Sbjct: 686 RSTSAANTTTAPTQTRQKKTSAGKPAAGKNPIDSKGSPTSEKSSRPATRGRPSTGRKPSA 745

Query: 297 K 295
           K
Sbjct: 746 K 746


>SB_50973| Best HMM Match : Oxysterol_BP (HMM E-Value=5.2e-09)
          Length = 529

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 599 VSKVLIDDVTSPIS-TVFNCATFGRSSSV*LDMYLRRCVVKNESALSCLL 745
           ++K  +  +TSP+  +VF C  F   SS  LD YL RC+  +     CLL
Sbjct: 144 LTKTSVPCLTSPLLISVFTCRLFFPPSSSSLDRYL-RCMPTSSLIQICLL 192


>SB_40958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 417 GQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADK 295
           GQ   AGG   ++A+ + G +  T+PA   +    + + DK
Sbjct: 281 GQQPAAGGQEPQEAQEQEGQQPGTEPAQSDKSNKKKHKKDK 321


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -3

Query: 504 AGGICGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPG 361
           A G  G+   Q  K +  T GR+G   +SG+    G   SR  RGR G
Sbjct: 505 ADGTPGEPGAQGTKRKPGTPGRQGMPGASGRRGAPGAKGSRGERGRVG 552


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 438 RGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEADK 295
           RG D   G+G+   G+ +R  RG+PG+R R Q A   R+    +  D+
Sbjct: 802 RGRDAPPGRGQ---GYTNR-GRGQPGNRYRDQGAPWDRRPERDNSRDR 845


>SB_29363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 461 RAAKLAEDAERTLAAVRESAREATEVVKHVADLA 360
           R AK+A  A RTL A+R + +     VK  A L+
Sbjct: 53  RCAKIATKANRTLGAIRRTLKPCAPAVKERAYLS 86


>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -3

Query: 465 KSRRETSGRRGEDISS-GQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEA 301
           +  R+   RR  D     +GER  G R R  R R   R R +     R+R  RS +
Sbjct: 130 RGERDRDRRRERDRGERDRGERDRGERDRGERDRRRDRDRDRDRDRDRERRRRSRS 185


>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 468 NKSRRETSGRRGEDISSGQGERAGGHRSRQ-ARGRPGHRTRTQPAAEGRQRTNRSEADK 295
           N+ R  + G R    S  +  R+ GHRSR   RGR   R R +   + R R    + D+
Sbjct: 433 NQHRERSPGHRRRSQSPRRRSRSPGHRSRSPRRGRDRDRDRGRDRRD-RDRDRDRDRDR 490


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -3

Query: 459 RRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSE 304
           RR    R G     G G   GG R  + RGRP   T T+      Q+T R++
Sbjct: 507 RRPRRRRGGGGGGGGGGGGGGGGRGGRGRGRPTTTTTTRRCV--TQKTQRAD 556


>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 474 QTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNR 310
           +T+ S R  S  RG    S +G+R    RS     R   R+R++    GR+R+ R
Sbjct: 641 RTSLSSRSRSRDRG---GSRRGKRRSRSRSSSYSSRSRSRSRSRDRGRGRKRSRR 692


>SB_20714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 426 ISSGQGERAGGHRSRQARGRPGHRTRTQP 340
           +S+G+GE  GG + R+    P  +T T P
Sbjct: 383 VSNGKGEEPGGRQERRGGSSPLSKTPTPP 411


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,308,187
Number of Sequences: 59808
Number of extensions: 351095
Number of successful extensions: 1142
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)