Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0354
(770 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 31 0.69
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 31 0.69
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 31 0.69
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 31 0.69
AF043704-2|AAX88816.1| 407|Caenorhabditis elegans Prion-like-(q... 31 0.91
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF016672-6|AAM34394.2| 165|Caenorhabditis elegans Vig (drosophi... 29 2.8
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 29 4.8
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 29 4.8
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 29 4.8
AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophi... 29 4.8
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 29 4.8
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 29 4.8
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 29 4.8
U58761-7|AAB00717.1| 481|Caenorhabditis elegans Hypothetical pr... 28 6.4
U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 28 8.5
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 8.5
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -3
Query: 486 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 307
D R+ + R+ + RR S +R+ H+ + GR HR+R++ ++ R R NRS
Sbjct: 599 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 656
Query: 306 EA 301
+
Sbjct: 657 RS 658
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -3
Query: 486 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 307
D R+ + R+ + RR S +R+ H+ + GR HR+R++ ++ R R NRS
Sbjct: 685 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 742
Query: 306 EA 301
+
Sbjct: 743 RS 744
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -3
Query: 486 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 307
D R+ + R+ + RR S +R+ H+ + GR HR+R++ ++ R R NRS
Sbjct: 687 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 744
Query: 306 EA 301
+
Sbjct: 745 RS 746
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = -3
Query: 486 D*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRS 307
D R+ + R+ + RR S +R+ H+ + GR HR+R++ ++ R R NRS
Sbjct: 685 DEDRERKRHRKRSRSRR-RSRSCSPRDRSREHKKSRKSGRH-HRSRSRSSSRDRHRRNRS 742
Query: 306 EA 301
+
Sbjct: 743 RS 744
>AF043704-2|AAX88816.1| 407|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 72
protein.
Length = 407
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 423 SSGQGERAGGHRSRQARGRPGHRTRTQPAA 334
SS + R+ HR R R RPGHR R P A
Sbjct: 143 SSPEPPRSSTHRQRIHRIRPGHRIRPSPPA 172
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -3
Query: 477 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTNRSEAD 298
R + RRE SG R S +R GG R ++R R R R R + +E D
Sbjct: 93 RDRRRDRRERSGSRDRRRRSRSRDRDGGRRRDRSRSR-DRRDRNDDRKRDRNEDSDNEED 151
>AF016672-6|AAM34394.2| 165|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform b
protein.
Length = 165
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 438 RGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEG 328
RGE +S+ G+R G R R G R +PA G
Sbjct: 27 RGERVSNENGDRPQGENRRGGPRRGGERGAARPAGRG 63
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -1
Query: 497 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 318
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 87 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 145
Query: 317 LTEARQIRDDIA 282
E Q++ A
Sbjct: 146 KREYEQLQKRFA 157
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -1
Query: 497 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 318
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 149 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 207
Query: 317 LTEARQIRDDIA 282
E Q++ A
Sbjct: 208 KREYEQLQKRFA 219
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -1
Query: 497 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 318
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 160 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 218
Query: 317 LTEARQIRDDIA 282
E Q++ A
Sbjct: 219 KREYEQLQKRFA 230
>AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform a
protein.
Length = 378
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 441 RRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEG 328
R GE +S+ G+R G R R G R +PA G
Sbjct: 86 RDGERVSNENGDRPQGENRRGGPRRGGERGAARPAGRG 123
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -1
Query: 497 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 318
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 87 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 145
Query: 317 LTEARQIRDDIA 282
E Q++ A
Sbjct: 146 KREYEQLQKRFA 157
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -1
Query: 497 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 318
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 149 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 207
Query: 317 LTEARQIRDDIA 282
E Q++ A
Sbjct: 208 KREYEQLQKRFA 219
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -1
Query: 497 EFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 318
EF + ++ SRA LAE AE+ L A ++ + TE + + + E K++
Sbjct: 160 EFISQQHERAASRAVPLAE-AEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERK 218
Query: 317 LTEARQIRDDIA 282
E Q++ A
Sbjct: 219 KREYEQLQKRFA 230
>U58761-7|AAB00717.1| 481|Caenorhabditis elegans Hypothetical
protein C01F1.1 protein.
Length = 481
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 429 DISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQR 319
D S G E GG ++A+ + + +PA E RQR
Sbjct: 218 DDSDGDDEGEGGDDGKKAKNKKKKKKNAKPAKEKRQR 254
>U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein
3, isoform c protein.
Length = 279
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -3
Query: 492 CGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGRQRTN 313
CG+ QR T + R T G+D G R R+ R R RT + E QR +
Sbjct: 210 CGNSQRNTKRIRSSTKRAEGQD--KGASSENMQTRDREVRSRETSRT-ARVRHERAQRAS 266
Query: 312 RS 307
S
Sbjct: 267 TS 268
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = -3
Query: 501 GGICGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEGR 325
GG G R ++S GR G G G R+G R G GH + GR
Sbjct: 233 GGRRGHGGRHGSRSG-SPGGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGRHGGHGR 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,496,785
Number of Sequences: 27780
Number of extensions: 274967
Number of successful extensions: 866
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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