Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0354
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 250 FALESHHQNLPAMSSLICLASVSA 321
           + L  HHQN    SSL+  AS S+
Sbjct: 169 YTLGHHHQNGATPSSLVSSASASS 192


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 174 NFFWRITINFVLYQPR 221
           N  WRIT NF  + PR
Sbjct: 207 NDSWRITHNFFYFDPR 222


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 420 SGQGERAGGHRSRQARGRPGHRTRT 346
           +G+G +  GH    +RGR G+R RT
Sbjct: 78  TGRG-KGRGHGKGGSRGRGGNRGRT 101


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 623 HRLSRPWKPVLRTYSDR*VYLI 558
           H    PW P+LR   D  +Y I
Sbjct: 540 HTWIHPWLPLLRNRLDTLIYPI 561


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,535
Number of Sequences: 438
Number of extensions: 3362
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)