Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0354
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61170.1 68414.m06893 expressed protein                             32   0.48 
At5g64670.1 68418.m08127 ribosomal protein L15 family protein          31   0.64 
At1g16770.1 68414.m02015 hypothetical protein                          31   0.84 
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r...    30   1.5  
At3g25920.1 68416.m03231 50S ribosomal protein L15, chloroplast ...    29   3.4  
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    28   7.9  
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami...    28   7.9  
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro...    28   7.9  

>At1g61170.1 68414.m06893 expressed protein
          Length = 251

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -3

Query: 507 YAGGICGD*QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGHRTRTQPAAEG 328
           Y  G+    +R   +SR   + R   D  S Q  R GG ++R+    PG R R  PA  G
Sbjct: 165 YGSGVRDPGERSGRRSRSPATNRSVMD--SNQSSRVGGAKTRKNNQSPG-RVRLDPAKNG 221


>At5g64670.1 68418.m08127 ribosomal protein L15 family protein
          Length = 281

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 456 RETSGRRGEDISSGQGERAG-GHRSRQARG 370
           R+   R+G  I SG+G+ AG GH+ ++ARG
Sbjct: 75  RKLKTRKGRGIGSGKGKTAGRGHKGQKARG 104


>At1g16770.1 68414.m02015 hypothetical protein
          Length = 324

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 480 QRQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRPGH 358
           +  T + +   SG+ G D  SG GE +G     + +G  GH
Sbjct: 55  ENPTEEKQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGH 95


>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1122

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/90 (18%), Positives = 43/90 (47%)
 Frame = -1

Query: 548 IFFFKLCI*ISF*CMQAEFAATDSDKQISRAAKLAEDAERTLAAVRESAREATEVVKHVA 369
           + ++K C+  +  C+     + DSD  +++ +       + L  + ++A  A  + K + 
Sbjct: 107 VMYYKKCLKKAKQCLSVSNQSEDSDSSVAQMSLHKNKTNKDLETLIKNAETAIALSK-IG 165

Query: 368 DLATGLELSQQPKVDSALTEARQIRDDIAG 279
            L   LE   +P+V  + + +  ++++I G
Sbjct: 166 KLKGLLEEDDEPEVLESKSSSEPVKNEIKG 195


>At3g25920.1 68416.m03231 50S ribosomal protein L15, chloroplast
           (CL15) identical to GB:P25873 from [Arabidopsis
           thaliana]
          Length = 277

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 456 RETSGRRGEDISSGQGERAG-GHRSRQARGRPG 361
           R+   R+G  IS+GQG   G G R +++R  PG
Sbjct: 93  RKKQKRKGRGISAGQGASCGFGMRGQKSRSGPG 125


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 470 QISRAAKLAEDAERTLAAVRESAREATEVVKHVADLATGLELSQQPKVDSA 318
           +I R  K A+DA    A      + ATE +K VA+    L+    P+V  +
Sbjct: 828 EIERFQKAAKDASELAARQSSKHKAATEALKSVAEQLKELKEKLPPEVSES 878


>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
           protein contains Pfam profile PF00383: Cytidine and
           deoxycytidylate deaminase zinc-binding region
          Length = 1307

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 700 QVHIQSNRTASSKSRAIKDRRYRRSHIVYQDLGNQC*EPTQ 578
           +VH+    T+S   +   +R   R H +  D GN+  E +Q
Sbjct: 387 EVHVNDAETSSQNQKLFNEREDYRVHSIRNDSGNENIESSQ 427


>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
           protein GI:1279562 from [Medicago sativa]
          Length = 557

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 477 RQTNKSRRETSGRRGEDISSGQGERAGGHRSRQARGRP 364
           R   + R  + G RG D   G+    GG  S + RGRP
Sbjct: 506 RDGGRGRFGSGGGRGRDGGRGRFGSGGGRGSDRGRGRP 543


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,638,927
Number of Sequences: 28952
Number of extensions: 255074
Number of successful extensions: 763
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)