Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0351
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.083
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.33 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    26   0.44 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   3.1  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   4.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   7.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.3 bits (60), Expect = 0.083
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 607  KQDFRPAPQFQSFAPAQDFAPLPPQQQRYTTANQFPQQKSQPYSMLDQLL 756
            +Q  +  PQ QS  P Q   P P QQQ+     Q PQQ+ + Y  +  L+
Sbjct: 1510 QQQQQQQPQQQSQQPQQQ-QPQPQQQQQQQQQQQ-PQQQQKEYGAVSGLV 1557



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 676  PQQQRYTTANQFPQQKSQ 729
            PQQQ+     Q PQQ+SQ
Sbjct: 1505 PQQQQQQQQQQQPQQQSQ 1522


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 365 RNHNPSTAPPPLVHNPSHNNNTDRPRNLSNSTDRTPNHNSN 487
           RN N ST      +  + NNN +   N +N+     N N N
Sbjct: 221 RNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGN 261



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 404 HNPSHNNNTDRPRNLSNSTDRTPNHNSN 487
           +N ++NNN +   N + + +   N+N+N
Sbjct: 242 NNNNNNNNNNNGANDNGNGNGASNNNNN 269


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
 Frame = +2

Query: 263 SRREVDHSTEPRLHNQTMTTRNPRLHRPRDPVPNRNHNPS--TAPPPLVHNPS----HNN 424
           SR+    S E R  N     R  R +R R    +R+      +  P ++ + S    HNN
Sbjct: 268 SRKRYSRSRE-REQNSYKNEREYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNN 326

Query: 425 NTDRPRNLSNSTDRTPNHNSN 487
           N     N +N+ +   N+N N
Sbjct: 327 NNYNNNNYNNNYNNYNNNNYN 347


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 151 IEYGANKYGFQPAGEGITVAPP 216
           I Y A++ GFQ  G  I  APP
Sbjct: 87  ITYVADENGFQVQGSHIPTAPP 108


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 152 LSTAPTNTDSSQPARASPLRLQPSSTSRPGTRDSDP 259
           L  A  +    Q  R S L +QP+S  R      DP
Sbjct: 434 LKIADLSAHDKQAVRMSALNVQPTSKGRITLNSKDP 469


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 199 CPRRLAGIRICWRR--TQSLVACQCRPCIHI 113
           CPR   G +  +R+  T++ + C CRPC  +
Sbjct: 92  CPRAKPGEKK-FRKVITKAPLECMCRPCTSV 121


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 26  KTAPTLMAMKPPMDPSRSRLNRKQVM*RANMDTR 127
           +T  T++AMK    P  +++NR   M R N   R
Sbjct: 350 ETLQTVVAMKMMHLPQSNKMNRMHRMNRVNRVNR 383


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 293 PRLHNQTMTTRNPRLHRPRDPVP 361
           P L N TM    PR  + + P+P
Sbjct: 15  PDLDNVTMPETTPRRKKNKKPLP 37


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/48 (25%), Positives = 16/48 (33%)
 Frame = +2

Query: 341 RPRDPVPNRNHNPSTAPPPLVHNPSHNNNTDRPRNLSNSTDRTPNHNS 484
           R RD               L +   HNNN     N +N      N+N+
Sbjct: 66  RSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNN 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.131    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,076
Number of Sequences: 438
Number of extensions: 4904
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)