Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0348
         (801 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0DV12 Cluster: Os03g0156800 protein; n=5; Oryza sativa...    33   6.3  

>UniRef50_Q0DV12 Cluster: Os03g0156800 protein; n=5; Oryza
           sativa|Rep: Os03g0156800 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 637

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -1

Query: 420 LKFSRSRIIVLIKTNYLAVAC-ILTYCWHMLIINLCYCSG 304
           L F R   + L KT+Y  +A  ILT+C H+L  ++ YC G
Sbjct: 335 LTFQRLTRLSLCKTSYFGLANRILTHCVHLLDFSIRYCPG 374


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,938,456
Number of Sequences: 1657284
Number of extensions: 9798688
Number of successful extensions: 16624
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 16198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16620
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)