Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0347
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    34   0.019
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    28   1.3  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   5.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   5.1  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.7  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   8.9  

>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 34.3 bits (75), Expect = 0.019
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 631 YKFLNCGYLTMFNALGLPVTACPIEMSKKGLPVGIQIAANRYKDHLTVAVANEF 470
           Y  L+   L   N  G+P  + P      GLP+GIQI A    D   ++ A +F
Sbjct: 417 YSHLSDTMLVPANMAGIPSVSIPFGTLNNGLPMGIQIMAQYLNDEDLLSFAGQF 470


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 718 TEFETILSDDAVLVFPTFPHPAHLHYR-VYYKFLN 617
           T  ET+L D AV V P  P   HLH + V + F N
Sbjct: 329 TRPETLLGDTAVAVHPQDPRYKHLHGKFVKHPFCN 363


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 503 FVSVCRNLDADREAFFRHFNRTGRNWQP*CIEHR*ISTVQKFIVH 637
           F    RNLD   E      +RT R W+P  ++    S +QKF V+
Sbjct: 708 FYGDTRNLDKASEKLRAEHDRTRRLWKPVLMDSL-FSNLQKFPVY 751


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 479  SDRHS*MIFVSVCRNLDADREAFFRHFNRTGR 574
            +D H+  ++ +  +N+D D+  F R   R GR
Sbjct: 1353 TDNHNIHVYRATAKNMDTDKRFFTRALVRPGR 1384


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = +1

Query: 196 YVLGNYSLS*FQLCRYCMH-------DVLKTQTLFGQI*LYIFFTRFFCVIISTILNISK 354
           YVL N  L  F+   Y +        D L T +LFG     +F T  +   I++ L+ISK
Sbjct: 111 YVLSNSELLEFEASEYSLLFILIIALDALLTVSLFGLFHHLMFLTTNYSYTINSTLDISK 170


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 724 IKTEFETILSDDAVLVFPTFPHPAHLHYRVYYKFLNCGYLTMFNALGLPVTACPI 560
           +KTE    L    + V+  FP P + + R+  +     YL    AL  P  +CP+
Sbjct: 122 LKTELNEALCSQ-IRVWSVFPAPKYFNPRISCESRTYEYLIPSFALLPPKPSCPL 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,732
Number of Sequences: 5004
Number of extensions: 66424
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)