Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0347
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0009 - 178579-178638,179151-179246,179504-179565,180181-18... 36 0.035
04_01_0101 + 1041755-1041864,1041950-1042102,1042174-1042424,104... 33 0.25
04_01_0102 + 1060539-1060657,1060752-1060904,1061478-1061728,106... 32 0.57
11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336... 31 0.75
05_06_0243 - 26639497-26641173 29 3.0
05_06_0241 - 26634632-26636263 29 3.0
04_04_1341 - 32768785-32768847,32770469-32770582,32770809-327708... 28 7.0
09_04_0476 - 17922072-17922469,17922546-17923241,17923405-179235... 28 9.3
>04_01_0009 -
178579-178638,179151-179246,179504-179565,180181-180245,
181271-181363,181489-181592,182070-182153,182223-182303,
182829-182880,183048-183119,183411-183486,183568-183680,
184056-184203,184295-184372,184511-184640,184733-184923,
187039-187099,187201-187371
Length = 578
Score = 35.9 bits (79), Expect = 0.035
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 595 NALGLPVTACPIEMSKKGLPVGIQIAANRYKDHLTVAVANEFEK 464
N LGLP P+ K+GLP+G+Q+ + + + VA+ E+
Sbjct: 517 NLLGLPAITVPVGHDKQGLPIGLQLIGRPWGEASLLRVASAIEE 560
>04_01_0101 +
1041755-1041864,1041950-1042102,1042174-1042424,
1042878-1043060,1043163-1043310,1043787-1043958,
1057226-1057366,1057478-1057624
Length = 434
Score = 33.1 bits (72), Expect = 0.25
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Frame = -3
Query: 727 DIKTEFETILSDDAVLVFPTFPHPAHL-HYRVYYKFLNCGYLTMFNALGLPVTA--CPIE 557
+ K+ +L D +L PT P P + + L+ F+ L + V + C +
Sbjct: 329 EFKSALAALLKDHGILAIPTVPGPPPMVGIQAQAAPLDNYQARAFSLLDIAVVSGFCQVS 388
Query: 556 M---SKKGLPVGIQIAANRYKDHLTVAVANE 473
+ + GLPV + + A DH + VA E
Sbjct: 389 IPLGKRNGLPVSVSLVARHGADHFLLNVAEE 419
>04_01_0102 +
1060539-1060657,1060752-1060904,1061478-1061728,
1061959-1062141,1062248-1062395,1062679-1062850,
1062971-1063105,1063210-1063356
Length = 435
Score = 31.9 bits (69), Expect = 0.57
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Frame = -3
Query: 742 LTKFEDIKTEFET----ILSDDAVLVFPTFPHP---AHLHYRVYYKFLNCGY--LTMFNA 590
L F+ I+ EF++ +L D +L PT P P + F + L++
Sbjct: 323 LEDFQAIRAEFKSALAALLKDHGILAIPTVPGPPPKVGMEAAPLENFRARAFSLLSIAGL 382
Query: 589 LGLPVTACPIEMSKKGLPVGIQIAANRYKDHLTVAVANE 473
G + P+ M + GLPV + + A DH + V E
Sbjct: 383 SGFCQVSIPLGM-RNGLPVSVSLVARHGADHFLLNVVEE 420
>11_01_0441 -
3363069-3363137,3363273-3363430,3363549-3363613,
3363709-3363777,3363881-3363973,3364081-3364184,
3364327-3364410,3364486-3364693,3364809-3364880,
3365005-3365080,3365788-3365900,3366006-3366153,
3366996-3367073,3367968-3368097,3368296-3368486,
3368644-3368704,3368847-3368956,3369090-3369312
Length = 683
Score = 31.5 bits (68), Expect = 0.75
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 595 NALGLPVTACPIEMSKKGLPVGIQIAANRYKDHLTVAVANEFEKAFG 455
N LGLP + ++GLPVG+Q + + + +A ++A G
Sbjct: 619 NFLGLPAITVKVGYDREGLPVGLQFIGRPWSEATLLHLAYAMQEACG 665
>05_06_0243 - 26639497-26641173
Length = 558
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 386 NYTNIILRFTLYCNRIFIRSCPA 454
N TN++LRFT Y R F+ SCP+
Sbjct: 390 NITNLVLRFTGY-GRWFVPSCPS 411
>05_06_0241 - 26634632-26636263
Length = 543
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 386 NYTNIILRFTLYCNRIFIRSCPA 454
N TN++LRFT Y R F+ SCP+
Sbjct: 375 NITNLVLRFTGY-GRWFVPSCPS 396
>04_04_1341 -
32768785-32768847,32770469-32770582,32770809-32770858,
32770940-32771033,32771144-32771221,32771397-32771472,
32771557-32771651,32771748-32771927,32772491-32772802,
32773122-32773670
Length = 536
Score = 28.3 bits (60), Expect = 7.0
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Frame = -3
Query: 757 YYKNLLTKFEDIKTEFETILSDDAVLVFPTFPHPAH-LHYRVYYKFLNCGYLTM---FNA 590
YYK +K F+ L +LV P P A+ + ++ TM N
Sbjct: 424 YYKRAQQVRTLVKKSFKEALERYDILVSPAAPSAAYKIGEKINDPLAMYAGDTMTVNVNL 483
Query: 589 LGLPVTACP---IEMSKKGLPVGIQIAANRYKD 500
GLP P +E GLPVG+Q+ + + +
Sbjct: 484 AGLPALVVPCGFVEGGSAGLPVGLQMIGSPFSE 516
>09_04_0476 -
17922072-17922469,17922546-17923241,17923405-17923569,
17923670-17924105,17924314-17924739
Length = 706
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 329 YQPFLIFQNDSMVTCDVCLNYTNIILRFTLYCNRIFIRSCPATECFLKFIS 481
Y P NDSMV N+TN RF+ N+IF+ C T +++ +S
Sbjct: 97 YDPVTKQMNDSMVG----QNFTNTPYRFSYEDNKIFVIGC-NTMAYMRGVS 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,717,669
Number of Sequences: 37544
Number of extensions: 377993
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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