Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0347
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-16|CAB61089.1| 535|Caenorhabditis elegans Hypothetical... 85 4e-17
AC024775-2|AAK68456.1| 452|Caenorhabditis elegans Hypothetical ... 40 0.003
AF099922-4|AAK21409.1| 497|Caenorhabditis elegans Hypothetical ... 31 1.2
U58752-5|AAO38681.1| 507|Caenorhabditis elegans Hypothetical pr... 29 3.6
U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical pr... 29 3.6
U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical pr... 29 3.6
U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical pr... 29 4.7
U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF016415-4|AAW88419.1| 298|Caenorhabditis elegans Serpentine re... 28 8.3
>AL132949-16|CAB61089.1| 535|Caenorhabditis elegans Hypothetical
protein Y53F4B.18 protein.
Length = 535
Score = 85.4 bits (202), Expect = 4e-17
Identities = 36/101 (35%), Positives = 58/101 (57%)
Frame = -3
Query: 751 KNLLTKFEDIKTEFETILSDDAVLVFPTFPHPAHLHYRVYYKFLNCGYLTMFNALGLPVT 572
KNLL K + +K + + +L D +L+FP++P A H N Y ++N L +PV
Sbjct: 429 KNLLYKRDRLKRQVKELLGTDGILLFPSWPCTAMYHNEPILAPFNFCYTALWNVLSVPVV 488
Query: 571 ACPIEMSKKGLPVGIQIAANRYKDHLTVAVANEFEKAFGGW 449
CP+ + +GLP+G+Q+ N+Y D +A+A E+ F GW
Sbjct: 489 QCPLGLDSRGLPLGVQVIGNQYTDRNLIAIAQVLEEGFNGW 529
>AC024775-2|AAK68456.1| 452|Caenorhabditis elegans Hypothetical
protein Y41D4A.6 protein.
Length = 452
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Frame = -3
Query: 757 YYKNLLTKFEDIKTEFETILSDDAVLVFPTF----PHPAHLHYRVYYKFLNCGYLTMF-N 593
Y++ L I E + ++V PT P + L ++ K N Y T N
Sbjct: 346 YFERALKVRRIIHDELRQAFREVDLIVTPTASGTAPKYSELRDTLFSKEDNDDYFTQAAN 405
Query: 592 ALGLPVTACPIEMSKKGLPVGIQIAANRYKDHLTVAVAN 476
G+P + P+ +++ GLP+G+Q+ A++ +D VA+
Sbjct: 406 LAGIPSISVPVGVAEDGLPIGVQLMADKLQDRAVCDVAH 444
>AF099922-4|AAK21409.1| 497|Caenorhabditis elegans Hypothetical
protein F56F11.3 protein.
Length = 497
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 584 AASYGLSD*NVEKRPPCRHPNCGKQIQRS 498
++SY S+ +V++ C HPNCGK +S
Sbjct: 400 SSSYDASEPSVKRLHHCTHPNCGKVYTKS 428
>U58752-5|AAO38681.1| 507|Caenorhabditis elegans Hypothetical
protein B0218.1b protein.
Length = 507
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 544 GLPVGIQIAANRYKDHLTVAVANEFEKAFGG 452
G+P+G+Q+AA Y++ + E E A G
Sbjct: 476 GMPIGVQVAAPPYREEAVLRTMREIEIAVTG 506
>U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical
protein B0218.1a protein.
Length = 572
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 544 GLPVGIQIAANRYKDHLTVAVANEFEKAFGG 452
G+P+G+Q+AA Y++ + E E A G
Sbjct: 541 GMPIGVQVAAPPYREEAVLRTMREIEIAVTG 571
>U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical
protein B0218.2 protein.
Length = 571
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 544 GLPVGIQIAANRYKDHLTVAVANEFEKAFGG 452
G P+G+Q+A YK+ + + E E+ G
Sbjct: 540 GFPIGVQVATPPYKEETCLRIMREIERGVTG 570
>U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical
protein C44B7.6b protein.
Length = 434
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +1
Query: 487 PQLNDLCICLPQFGCRQGGLFSTF 558
P L L I LPQF CR G LF F
Sbjct: 385 PSLFHLLIFLPQFECRIGFLFDIF 408
>U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical
protein C44B7.6a protein.
Length = 489
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = +1
Query: 487 PQLNDLCICLPQFGCRQGGLFSTF 558
P L L I LPQF CR G LF F
Sbjct: 440 PSLFHLLIFLPQFECRIGFLFDIF 463
>AF016415-4|AAW88419.1| 298|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 31 protein.
Length = 298
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -3
Query: 235 TVEIS*GYNCLIHIVMRMSYLK---GLVHFSISF*CDLCIGNPLFKYRSVVLLF 83
++E+ N + IV+R S K GL ++ + DLC G L Y S +L+F
Sbjct: 17 SIEVLLNTNLVWKIVLRKSQRKCEMGLFYYRFAL--DLCFGLALLSYISFILIF 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,154,717
Number of Sequences: 27780
Number of extensions: 377287
Number of successful extensions: 697
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -