Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0344
(557 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q7PP06 Cluster: ENSANGP00000017752; n=4; Endopterygota|... 39 0.069
UniRef50_Q9DUC9 Cluster: ORF1; n=17; Torque teno virus|Rep: ORF1... 37 0.28
UniRef50_A1SFQ7 Cluster: Twitching motility protein precursor; n... 37 0.37
UniRef50_Q3BMA1 Cluster: Putative uncharacterized protein; n=2; ... 36 0.48
UniRef50_UPI00006C1B62 Cluster: PREDICTED: hypothetical protein;... 36 0.64
UniRef50_Q8IEA1 Cluster: Putative uncharacterized protein MAL13P... 36 0.64
UniRef50_A0UKP2 Cluster: Rieske (2Fe-2S) domain protein; n=1; Bu... 35 1.1
UniRef50_A0KDH5 Cluster: Rieske (2Fe-2S) domain protein; n=3; Bu... 34 2.0
UniRef50_Q9VV18 Cluster: CG13047-PA; n=3; Drosophila melanogaste... 34 2.0
UniRef50_Q16TD9 Cluster: Putative uncharacterized protein; n=1; ... 34 2.0
UniRef50_Q9TXD9 Cluster: Larval cuticle protein F1; n=2; Tenebri... 34 2.0
UniRef50_UPI0000D5678D Cluster: PREDICTED: similar to CG33087-PC... 34 2.6
UniRef50_Q7USF2 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_Q4Y9T8 Cluster: Putative uncharacterized protein; n=2; ... 34 2.6
UniRef50_Q0U8R2 Cluster: Putative uncharacterized protein; n=1; ... 34 2.6
UniRef50_A6SFA4 Cluster: Putative uncharacterized protein; n=2; ... 34 2.6
UniRef50_A7RY79 Cluster: Predicted protein; n=1; Nematostella ve... 33 3.4
UniRef50_Q6QHS4 Cluster: Proteoliaisin; n=2; Strongylocentrotus ... 33 4.5
UniRef50_A7SHD7 Cluster: Predicted protein; n=1; Nematostella ve... 33 4.5
UniRef50_UPI00004D9517 Cluster: mucin 4 isoform d; n=2; Xenopus ... 33 6.0
UniRef50_UPI0000660900 Cluster: Stabilin-2 precursor (Fasciclin,... 33 6.0
UniRef50_UPI0000EB3A70 Cluster: Uncharacterized protein C1orf167... 33 6.0
UniRef50_Q38CA2 Cluster: Serine/threonine-protein kinase, putati... 33 6.0
UniRef50_Q1CY24 Cluster: Putative lipoprotein; n=1; Myxococcus x... 32 7.9
UniRef50_A7HDZ9 Cluster: Putative uncharacterized protein; n=1; ... 32 7.9
UniRef50_A4SAJ2 Cluster: Predicted protein; n=1; Ostreococcus lu... 32 7.9
>UniRef50_Q7PP06 Cluster: ENSANGP00000017752; n=4;
Endopterygota|Rep: ENSANGP00000017752 - Anopheles
gambiae str. PEST
Length = 138
Score = 39.1 bits (87), Expect = 0.069
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 99 PGPYGVPIAAPIAAPWGHGIVSAPLVSAG-VVKTAVPVATSYANTVR 236
P YG P+ +AAP + +AP A +VK PVATSYANT +
Sbjct: 42 PYAYGAPVVKTVAAPVAY---AAPAYHAAPIVKAVAPVATSYANTYK 85
>UniRef50_Q9DUC9 Cluster: ORF1; n=17; Torque teno virus|Rep: ORF1 -
Torque teno virus
Length = 735
Score = 37.1 bits (82), Expect = 0.28
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -3
Query: 333 RRVQPRWERVQPRWERVRRQSVREQLPQRGMRS*RCLRKKWRPAQQFLLLQRSPVGR*RY 154
RR + RW R +PRW R RR+ + P+R +R R +R++ R ++ R GR Y
Sbjct: 6 RRRRWRWRRRRPRWRRWRRRRTWRRRPRRAVRR-RRVRRRGRGWRRLYRRYRRRRGRRTY 64
Query: 153 -HGPKVRRW 130
P + +W
Sbjct: 65 KKKPVLTQW 73
>UniRef50_A1SFQ7 Cluster: Twitching motility protein precursor; n=1;
Nocardioides sp. JS614|Rep: Twitching motility protein
precursor - Nocardioides sp. (strain BAA-499 / JS614)
Length = 430
Score = 36.7 bits (81), Expect = 0.37
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +3
Query: 99 PGPYGVPIAAPIAAPWGHGIVSAPLVSAGVVKTAVPVATSYAN 227
P P VP+AAP+A P V AP+ +A VV A P AN
Sbjct: 29 PAPVAVPVAAPVAVP---APVVAPVAAAAVVPPAAPAPAGSAN 68
>UniRef50_Q3BMA1 Cluster: Putative uncharacterized protein; n=2;
Xanthomonas|Rep: Putative uncharacterized protein -
Xanthomonas campestris pv. vesicatoria (strain 85-10)
Length = 378
Score = 36.3 bits (80), Expect = 0.48
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 333 RRVQPRWERVQPRWE-RVRRQSVREQLPQRGMR 238
RR PRW RV P W+ R RR+S R QR MR
Sbjct: 193 RRRWPRWRRVFPAWQMRCRRRSARSSPSQRRMR 225
>UniRef50_UPI00006C1B62 Cluster: PREDICTED: hypothetical protein;
n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
Homo sapiens
Length = 145
Score = 35.9 bits (79), Expect = 0.64
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -1
Query: 341 VGIGGCSHDGSVCSHD---GSVCGDNRCVSSYHSGGCDPNGVC 222
+G G C DG VC + GS D C SGGCD +GVC
Sbjct: 6 LGSGSCDDDG-VCGGELSSGSCDDDGVCRGDLGSGGCDDDGVC 47
Score = 33.1 bits (72), Expect = 4.5
Identities = 28/89 (31%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Frame = -1
Query: 341 VGIGGCSHDGSVCSH--DGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFYYSSAHQW 168
+G G C DG + GS D C SG CD +G+C G S
Sbjct: 51 LGSGSCDDDGMCRGYLGSGSSDDDGMCGGELSSGSCDDDGMC---GGELGSRSCDDDGVC 107
Query: 167 GADDTMAPRCGDGRCNRHTIWSWSSRGDG 81
G D DG C R + S SS DG
Sbjct: 108 GGDLGSGSCDDDGVCGR-DLGSGSSDDDG 135
>UniRef50_Q8IEA1 Cluster: Putative uncharacterized protein
MAL13P1.116; n=1; Plasmodium falciparum 3D7|Rep:
Putative uncharacterized protein MAL13P1.116 -
Plasmodium falciparum (isolate 3D7)
Length = 3347
Score = 35.9 bits (79), Expect = 0.64
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -1
Query: 326 CSHDGSVCSHDGSVCGDNRCVSSYHSGGC-DPNGVCVRSGDRHSSFYYSSAH 174
CS D +CS D ++C D+ + S + C D N +C + Y H
Sbjct: 517 CSDDNKICSDDNNICSDDNKICSNDNNICSDDNNICSEREQMNLEELYKQNH 568
>UniRef50_A0UKP2 Cluster: Rieske (2Fe-2S) domain protein; n=1;
Burkholderia multivorans ATCC 17616|Rep: Rieske (2Fe-2S)
domain protein - Burkholderia multivorans ATCC 17616
Length = 405
Score = 35.1 bits (77), Expect = 1.1
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -1
Query: 377 LVVVRIVTGLPAVGIGGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRS-GDR 204
LVV R G C H G+ H G V GD+ V +H P+G C+R+ GDR
Sbjct: 128 LVVYRTARGEAHAVEPYCPHLGAHLGHGGKVNGDD-LVCPFHGLAFGPDGTCIRAPGDR 185
>UniRef50_A0KDH5 Cluster: Rieske (2Fe-2S) domain protein; n=3;
Burkholderia cenocepacia|Rep: Rieske (2Fe-2S) domain
protein - Burkholderia cenocepacia (strain HI2424)
Length = 351
Score = 34.3 bits (75), Expect = 2.0
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 392 RFI-TSLVVVRIVTGLPAVGIGGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVR 216
RF+ +V+ R +GL C H G+ H G V G+ V +H P+G CVR
Sbjct: 41 RFMGADVVLYRTASGLIRAVAPHCPHLGAHLGHGGVVRGEE-IVCPFHHLAFAPDGTCVR 99
Query: 215 SG 210
+G
Sbjct: 100 AG 101
>UniRef50_Q9VV18 Cluster: CG13047-PA; n=3; Drosophila
melanogaster|Rep: CG13047-PA - Drosophila melanogaster
(Fruit fly)
Length = 179
Score = 34.3 bits (75), Expect = 2.0
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +3
Query: 108 YGVPIAAPIAAPWGHGIVSAPLVS---AGVVKTAVPVATSYA 224
Y P+AAP+AAP V+APL + A +A P A+ YA
Sbjct: 108 YSAPLAAPVAAPLAAAPVAAPLAAAPYAAAAYSAYPYASPYA 149
>UniRef50_Q16TD9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 1709
Score = 34.3 bits (75), Expect = 2.0
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = -1
Query: 338 GIGGCSHDGSV-CSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFYYSSAHQWGA 162
G GC+ + + C H C++S + C G CV D F
Sbjct: 311 GTDGCNSNTIIECYHCSFDEATQDCITSGSTETCSTTGDCVVYIDNEGKFVRGCESDLPT 370
Query: 161 DDTMAPRCGDGRCNRHTI 108
+ T A C D CN++ +
Sbjct: 371 EATCAKTCSDNMCNKNDV 388
>UniRef50_Q9TXD9 Cluster: Larval cuticle protein F1; n=2;
Tenebrionidae|Rep: Larval cuticle protein F1 - Tenebrio
molitor (Yellow mealworm)
Length = 162
Score = 34.3 bits (75), Expect = 2.0
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 102 GPYGVPIAAPIAAPWGHGIVSAPLVSAG--VVKTAVPVATSYANTV 233
G G PIAAPIAAP +VS + A V A P+A ++A V
Sbjct: 1 GLIGAPIAAPIAAPLATSVVSTRTIHAAPVAVAHAAPLAVAHAAPV 46
>UniRef50_UPI0000D5678D Cluster: PREDICTED: similar to CG33087-PC;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG33087-PC - Tribolium castaneum
Length = 1872
Score = 33.9 bits (74), Expect = 2.6
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 305 CSHDGSVCGDNRCVS-SYHSGGCDPNGVCVRSGDRHSSFYYSSAHQWGADDT 153
C +D +CGD+RC+ S+H C+ N C+ + D + + + Q+ D++
Sbjct: 5 CQNDQFMCGDSRCIPLSWH---CNGNPDCLDNSDEYDCHHQCRSDQFKCDNS 53
>UniRef50_Q7USF2 Cluster: Putative uncharacterized protein; n=1;
Pirellula sp.|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 172
Score = 33.9 bits (74), Expect = 2.6
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Frame = -1
Query: 341 VGIGGCSHDGSVCSHDGSVCGDNRCVSSYHS-----GGCDPNG-VCVRSGDRHSSFYYSS 180
V GG HDG C H G+V + +H G C+ + VC + + HS++ Y S
Sbjct: 27 VACGGHDHDG--CQHVGAVDESPSVHAGHHHHSTGHGACEHHSDVCDSNPNEHSAYAYDS 84
Query: 179 AHQWGADDTMAPRCGD 132
G D P GD
Sbjct: 85 VCDVGCDCQSDPCDGD 100
>UniRef50_Q4Y9T8 Cluster: Putative uncharacterized protein; n=2;
Plasmodium berghei|Rep: Putative uncharacterized protein
- Plasmodium berghei
Length = 208
Score = 33.9 bits (74), Expect = 2.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 238 SHPPLW*LLTHRLSPHTLPSWLHTLPSWLHPP 333
SHP LW T L H+ P W H+ P W + P
Sbjct: 30 SHPVLW-CQTAALWSHSAPLWCHSAPMWCYMP 60
>UniRef50_Q0U8R2 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 384
Score = 33.9 bits (74), Expect = 2.6
Identities = 22/72 (30%), Positives = 27/72 (37%)
Frame = -1
Query: 332 GGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFYYSSAHQWGADDT 153
G C C CG N C +Y G C + R SS + S QWG T
Sbjct: 311 GNCCSRFGYCGSSADYCGSN-CDPAY--GTCGSGSTPTPTTIRTSSVWGSCCSQWGYCGT 367
Query: 152 MAPRCGDGRCNR 117
+ CG CN+
Sbjct: 368 GSDYCG-ANCNK 378
>UniRef50_A6SFA4 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 964
Score = 33.9 bits (74), Expect = 2.6
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +3
Query: 105 PYGVPIAAPIAAPWGHGIVSAPLVSAGVVKTAVPVAT 215
P P+AAP+AAP V+AP+V+ V A PVAT
Sbjct: 206 PAAAPVAAPVAAP-----VAAPVVAPVVAPVATPVAT 237
>UniRef50_A7RY79 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 243
Score = 33.5 bits (73), Expect = 3.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -1
Query: 332 GGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPN-GVCVRSGDRHSSFYYSSAHQWGA 162
G CS+ CS+ S C + SYH G C + G C S ++ + ++ +GA
Sbjct: 134 GACSYHYGACSYHYSACSYHYGACSYHYGACSYHCGACSYHYGACSYYHGACSYHYGA 191
Score = 32.3 bits (70), Expect = 7.9
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = -1
Query: 332 GGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCD-PNGVCVRSGDRHSSFYYSSAHQWGADD 156
G CS+ CS+ S C + SYH G C +G C S + + ++ +GA
Sbjct: 64 GACSYHYGACSYHYSACSYHCDACSYHYGACSYYHGACSYHYGACSYHHGACSYHYGACS 123
Query: 155 TMAPRCG--DGRCNRH 114
C G C+ H
Sbjct: 124 YHYGACSYHYGACSYH 139
>UniRef50_Q6QHS4 Cluster: Proteoliaisin; n=2; Strongylocentrotus
purpuratus|Rep: Proteoliaisin - Strongylocentrotus
purpuratus (Purple sea urchin)
Length = 1068
Score = 33.1 bits (72), Expect = 4.5
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -1
Query: 317 DGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHS 198
DG+ CS DG VC DN C+S + CD N C D ++
Sbjct: 799 DGTPCS-DGFVCDDNSCIS--QNKVCDGNRDCYSGEDENN 835
>UniRef50_A7SHD7 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1252
Score = 33.1 bits (72), Expect = 4.5
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = -1
Query: 335 IGGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFYYSSAHQWGADD 156
+G C+H + C + S C D C S C+ N CV SF Y H+W D+
Sbjct: 626 VGMCAH--TRCDNSTS-CDD--CTRSKGCMWCESNQKCVPLNAYVVSFPYGQCHEWTRDN 680
Query: 155 TMA 147
T A
Sbjct: 681 TCA 683
>UniRef50_UPI00004D9517 Cluster: mucin 4 isoform d; n=2; Xenopus
tropicalis|Rep: mucin 4 isoform d - Xenopus tropicalis
Length = 1571
Score = 32.7 bits (71), Expect = 6.0
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = -1
Query: 347 PAVGIGGC----SHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSG 210
P+ G G C + DG C+ +G+VC + C SSY C G C R G
Sbjct: 1257 PSAGCGKCPAGLTGDGLHCNGNGTVCTYDACESSY----CFNGGTCRRQG 1302
>UniRef50_UPI0000660900 Cluster: Stabilin-2 precursor (Fasciclin,
EGF-like, laminin-type EGF-like and link
domain-containing scavenger receptor 2) (FEEL-2) (FAS1
EGF-like and X-link domain-containing adhesion molecule
2) (Hyaluronan receptor for endocytosis) [Contains: 190
kDa form stabi; n=1; Takifugu rubripes|Rep: Stabilin-2
precursor (Fasciclin, EGF-like, laminin-type EGF-like
and link domain-containing scavenger receptor 2)
(FEEL-2) (FAS1 EGF-like and X-link domain-containing
adhesion molecule 2) (Hyaluronan receptor for
endocytosis) [Contains: 190 kDa form stabi - Takifugu
rubripes
Length = 2226
Score = 32.7 bits (71), Expect = 6.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 296 DGSVCGDNRCVSSYHSGGCDPNGVCVRSG 210
DG C ++ + H GGC PN CV++G
Sbjct: 711 DGITCVESDPCAPPHRGGCSPNAKCVKTG 739
>UniRef50_UPI0000EB3A70 Cluster: Uncharacterized protein C1orf167;
n=1; Canis lupus familiaris|Rep: Uncharacterized protein
C1orf167 - Canis familiaris
Length = 729
Score = 32.7 bits (71), Expect = 6.0
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -3
Query: 297 RWERVRRQSVREQLPQRGMRS*RCLRKKWRPAQQFLLLQRSP 172
RW +V RQS+R + QR R+ R+ P +Q LL SP
Sbjct: 269 RWVQVHRQSLRRSVFQRWRRAAARRRRPGAPPEQLLLHSHSP 310
>UniRef50_Q38CA2 Cluster: Serine/threonine-protein kinase, putative;
n=1; Trypanosoma brucei|Rep: Serine/threonine-protein
kinase, putative - Trypanosoma brucei
Length = 987
Score = 32.7 bits (71), Expect = 6.0
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -1
Query: 233 NGVC-VRSGDRHSSFYYSSAHQWGADDTMAPRCGDGRCNRHTIWSWSSRGDGQESGEYNQ 57
+GVC RSG S G D +M RCG R W +SRGD S E+ Q
Sbjct: 130 SGVCGSRSGSNEKR---RSVCSGGGDASM--RCGSRSSGRRNAWKTTSRGDKSPSEEHQQ 184
Query: 56 LI 51
I
Sbjct: 185 WI 186
>UniRef50_Q1CY24 Cluster: Putative lipoprotein; n=1; Myxococcus
xanthus DK 1622|Rep: Putative lipoprotein - Myxococcus
xanthus (strain DK 1622)
Length = 538
Score = 32.3 bits (70), Expect = 7.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 362 IVTGLPAVGIGGCSHDGSVCSHDGSVCGDNRCV 264
++T + A+ + GC +G+VC+ SVCGD CV
Sbjct: 17 LLTAVAALLLTGCPEEGAVCTSGLSVCGD-ACV 48
>UniRef50_A7HDZ9 Cluster: Putative uncharacterized protein; n=1;
Anaeromyxobacter sp. Fw109-5|Rep: Putative
uncharacterized protein - Anaeromyxobacter sp. Fw109-5
Length = 751
Score = 32.3 bits (70), Expect = 7.9
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 332 GGCSHDGSVCSHDGSVCGDNRCV--SSYHSGGCDPNGVCVRSGD 207
G C+ +GS C+ D C N C+ ++ G CDP C+++GD
Sbjct: 158 GACTVEGSSCAADLECCSKN-CLGETATARGTCDPR-TCIQAGD 199
>UniRef50_A4SAJ2 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 376
Score = 32.3 bits (70), Expect = 7.9
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 317 DGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFYYSSAHQWGADDTMA-PR 141
DG VCS G D C + SGG VC + D + + ++G D+ +A +
Sbjct: 182 DGVVCSGRGQCLADGSCNCNDGSGGPTCENVCPLATDEDEALF----SRYGLDENIAGEK 237
Query: 140 C-GDGRCN 120
C G G C+
Sbjct: 238 CAGHGTCD 245
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,582,280
Number of Sequences: 1657284
Number of extensions: 11912578
Number of successful extensions: 41065
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 38317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40890
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -