Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0344
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   3.3  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    26   3.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.5  

>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 384 YKTHQTIKVQQPTYYLFRPKKIWNVILEKLSL 479
           +  H  +   QP  + F PK +W V+   LSL
Sbjct: 672 FYAHSDVPAHQPDVW-FEPKYLWEVLAADLSL 702


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -3

Query: 306 VQPRWERVRRQSV-REQLPQRGMRS*RCLRKKWRPAQQFLLLQRSPVGR*RYHGPKVRRW 130
           ++P W +    ++ R+QLP    R+    +KKW   ++     RS      YHGP++R +
Sbjct: 14  LRPSWNKYNIYNIARKQLPALNNRT--LYQKKWNAKKE----TRS------YHGPQLREY 61

Query: 129 ALQ*AHHMVLE 97
            L+ A    LE
Sbjct: 62  QLKNAFRPKLE 72


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -1

Query: 125 CNRHTIWSWSSRGDGQESGEYNQL 54
           C+R  +W+W       + GEY+ +
Sbjct: 663 CDRRMVWAWRGEYYPAKKGEYHMI 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,645
Number of Sequences: 5004
Number of extensions: 43706
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)