Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0344
(557 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0286 + 19833114-19834053,19834149-19834165 29 1.9
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 29 2.5
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 29 2.5
12_02_1146 + 26458426-26458680 29 3.3
07_01_0408 - 3137705-3138017,3139361-3139371,3140693-3140770,314... 29 3.3
01_01_0521 - 3826257-3826616,3826758-3826918,3826992-3827049,382... 29 3.3
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 28 4.4
06_03_0907 - 25851673-25852368,25853531-25853585,25853973-258540... 28 5.8
05_01_0192 + 1394342-1396645 28 5.8
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 28 5.8
12_02_0197 + 15392427-15392617,15392743-15393271 23 7.1
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 27 7.7
>05_04_0286 + 19833114-19834053,19834149-19834165
Length = 318
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = -1
Query: 368 VRIVTGLPAVG---IGGCSHDGSVCSHDGSVCGDNRCVSSYHS-GGCDPNGVCVR 216
+R+ LP G C G VC HDG GD ++S CD + R
Sbjct: 238 IRVSWALPEANRGFCGACRATGGVCGHDGDSHGDLCLCGDWNSTSNCDSSADAAR 292
>06_01_0090 -
724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 348 TSRGHRRVQPRWERVQPRWERVRRQSVREQ 259
+S RR PR ERV WER+ R +++ Q
Sbjct: 2 SSSSSRRRPPRPERVMDNWERLVRAALKHQ 31
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 29.1 bits (62), Expect = 2.5
Identities = 24/71 (33%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Frame = +1
Query: 130 PSPHLGAMVSSAPHW*ALE**KLLCRSPL-LTQTPLGSHPPLW*LLTHRLSPHTLPSWLH 306
P PH AMV PH CR PL + P P SPH P L
Sbjct: 327 PPPHAAAMVPPPPHP------PPFCRPPLHVWGHPTAGVEPTTAAAPPPPSPHAQPPLLP 380
Query: 307 TLPSWLHPPMP 339
P L PP P
Sbjct: 381 VWPRHLAPPPP 391
>12_02_1146 + 26458426-26458680
Length = 84
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 110 WCAYCSAHRRTLGPWYRQRPT 172
WCA+ S HR + PW R PT
Sbjct: 50 WCAH-SFHRHCVDPWLRLNPT 69
>07_01_0408 -
3137705-3138017,3139361-3139371,3140693-3140770,
3141105-3141206,3141309-3141380,3141484-3141558
Length = 216
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 232 TVFA*EVATGTAVFTTPALTSGAL--TIPWPQGAAMGAAIGTP 110
T F+ VA A +TPA +S AL T+ +P A AA TP
Sbjct: 48 TPFSSAVAAAAAAASTPARSSSALTQTLSFPIQATRSAATSTP 90
>01_01_0521 -
3826257-3826616,3826758-3826918,3826992-3827049,
3827426-3827497,3827582-3827639,3828231-3828347,
3828630-3828782,3829182-3829346,3829814-3830132,
3830276-3830780
Length = 655
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 311 SVCSHDGSVCGDNRCVSSYHSGGCDPNGV-CVRSGDRHSS 195
S+ S D D+RCVS SG CD N V + S D + S
Sbjct: 608 SLASEDECTDEDDRCVSWAASGECDRNPVFMIGSSDYYGS 647
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Frame = +1
Query: 202 CRSP---LLTQTPLGSHPPLW*LLTHRLSPHTLPSWLHTLPSWLHPPMPTAGKPV-TIRT 369
C +P ++ + LG+H L L++ RL+P LH WL PP + T++
Sbjct: 367 CSNPSYYVIWPSKLGTHISLEYLISFRLTPEIQDYLLHLKGLWLCPPPKEVEVDLSTLQP 426
Query: 370 TTKL----VIKRIKPLKCNSQLTIYLGLRKFGMSYWKNLACNKLDC 495
K+ ++K+I + L L + S W +C++++C
Sbjct: 427 ENKITREEMVKKIIIIVGEQLLLDSLTKLNYNPSEWYK-SCSEVNC 471
>06_03_0907 -
25851673-25852368,25853531-25853585,25853973-25854068,
25854170-25854435
Length = 370
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -2
Query: 217 EVATGTAVF--TTPALTSGALTIPWPQGAAMGAAIGTPY 107
+V +G A F +PA ++GA+ WP AA A P+
Sbjct: 136 DVLSGAASFMQASPASSAGAMAAAWPVTAAAAATTRWPF 174
>05_01_0192 + 1394342-1396645
Length = 767
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 134 DGRCNRHTIWSWSSRGDGQ 78
+GRCN W WS G GQ
Sbjct: 622 EGRCNNLVEWVWSLHGAGQ 640
>01_01_0548 -
4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 259 LLTHRLSPHTLPSWLHTLPSWL 324
L HR H P W +TLPSWL
Sbjct: 603 LYKHR-DLHFYPPWAYTLPSWL 623
>12_02_0197 + 15392427-15392617,15392743-15393271
Length = 239
Score = 23.4 bits (48), Expect(2) = 7.1
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -1
Query: 338 GIGGCSHDGSVCSHDGSVCGDNR 270
G G C + G C G CG R
Sbjct: 75 GCGCCGYGGGGCGDRGRYCGVRR 97
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = -1
Query: 296 DGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSS 195
DG + +C+ G G SGDRH +
Sbjct: 110 DGRIWPARQCLEEGLEAGSAQRGAANGSGDRHGA 143
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 105 PYGVPIAAPIAAPWGHG-IVSAPLVSAGVVKTAVPVA 212
P G P+AA A GHG + P + G TA P A
Sbjct: 238 PVGAPVAAGPVAQVGHGPVTDGPTIQGG-ASTAFPPA 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,674
Number of Sequences: 37544
Number of extensions: 364325
Number of successful extensions: 1218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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