Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0344
(557 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 32 0.37
SB_29579| Best HMM Match : Glyco_hydro_18 (HMM E-Value=1.4) 30 1.5
SB_40892| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 2.6
SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_41612| Best HMM Match : OstA (HMM E-Value=5.2) 29 3.4
SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06) 29 3.4
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 28 4.5
SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_37547| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 28 5.9
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3) 28 5.9
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 28 5.9
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_53799| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 27 7.9
SB_32684| Best HMM Match : Extensin_2 (HMM E-Value=0.96) 27 7.9
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
Length = 509
Score = 31.9 bits (69), Expect = 0.37
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Frame = -1
Query: 332 GGCSHDG---SVCSHDG---SVCGDNRCVSSYHSGGCDPNGVCVR---SGDRHSS---FY 189
GGC DG S C DG S C D+ S + GCD +G CV GD SS +
Sbjct: 397 GGCDDDGGDDSSCDDDGGDDSGCYDDGNGSVFDDEGCDDSG-CVNDGGDGDGSSSGLEYG 455
Query: 188 YSSAHQW 168
+S H W
Sbjct: 456 FSGFHIW 462
>SB_29579| Best HMM Match : Glyco_hydro_18 (HMM E-Value=1.4)
Length = 367
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = -1
Query: 227 VCVRSG-DRHSSFYYSSAHQWGADDTMAPRCGDGRCNRHTIWSWSSRGDGQESGEYN 60
+C+ G R F + G D G+G N H I + + D E G YN
Sbjct: 31 LCIEFGLPRKPDFRWKGGRNHGLGDVFVFYPGEGYRNVHVIRGYDTAADDDEGGTYN 87
>SB_40892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 29.1 bits (62), Expect = 2.6
Identities = 26/95 (27%), Positives = 33/95 (34%)
Frame = -1
Query: 353 GLPAVGIGGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFYYSSAH 174
G A G GG HDG DG D+ + GG D +G G +A
Sbjct: 111 GYDAAGGGGSDHDGYDAVGDGG--SDDDGYDAAGGGGSDDDGDDAGGGGGSDHDGDDAAG 168
Query: 173 QWGADDTMAPRCGDGRCNRHTIWSWSSRGDGQESG 69
G+DD G G + S DG + G
Sbjct: 169 GGGSDDDGYDAAGGGGSDDDGDDGGGSYDDGDDGG 203
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 199 LCRSPLLTQTPLGSHPPLW*LLTHRLSPHTLPSWLHTLP-SWLHPPMPTAGKPVTIRTTT 375
LCR PL T PL + P + + R SP P P + P + T RTTT
Sbjct: 783 LCRKPLSTTPPLHNSSPQYPCHSFRTSPSIQPYIETNTPIDCGNSSFPIEMRTATSRTTT 842
Query: 376 KLVI 387
+ I
Sbjct: 843 VVTI 846
>SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 322 LHPPMPTAGKPVTIRTTTKLVIKRIKPLKCNSQLTIYLG 438
+HP MPT K + + K + ++I P C Y G
Sbjct: 419 IHPYMPTVSKEIQTQLKPKPLFQKIDPAVCEKLKAKYAG 457
>SB_41612| Best HMM Match : OstA (HMM E-Value=5.2)
Length = 442
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 323 SHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGD 207
SHD SV +++ V DN+ V+ Y+ G N +C+ + +
Sbjct: 404 SHDISVDTNNQGVNTDNKGVNPYNQGLYPYNNICINTNN 442
>SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)
Length = 336
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 380 SLVVVRIVTGLPAVGIGGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPN-GVCVRS 213
S+ V + G+ + +G C+ VC+ SVC + V + +G C GVC S
Sbjct: 28 SVGVFTLSAGICTLKVGVCTLSAGVCTLSASVCTLSAGVCTLSAGVCTLKVGVCTLS 84
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 371 VVRIVTGLPAVGIGGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPN-GVCVRS 213
V + G+ + +G C+ VC+ SVC + V + +G C + GVC S
Sbjct: 66 VCTLSAGVCTLKVGVCTLSAGVCTLSASVCTLSASVCTLSAGVCTLSAGVCTLS 119
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 296 DGSVCGD-NRCVSSYHSGGCDPNGVCVRS 213
DG C D + C S H+ CDPN +C S
Sbjct: 247 DGKQCKDVDECASVLHNK-CDPNALCTNS 274
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = -3
Query: 399 FDAFYNKFSCCSDCYWFTSRGHRRVQPRWERVQPRWERVRRQ 274
FD K + RR+ R +++Q +WER+RR+
Sbjct: 1114 FDDLQKKMDESKAKHLLPEEEERRLAERADKIQEQWERIRRE 1155
>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -1
Query: 332 GGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFYYSSAHQW---GA 162
G +G++ + SVC D R + +GG VC G +++ S H+
Sbjct: 529 GEVDENGNLVASVKSVCADGRSKGNGGNGGKRSRYVCAECGKSYATSSNLSRHKQTHRSL 588
Query: 161 DDTMAPRC 138
D +A RC
Sbjct: 589 DGKLAKRC 596
>SB_37547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/57 (22%), Positives = 22/57 (38%)
Frame = -1
Query: 293 GSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFYYSSAHQWGADDTMAPRCGDGRC 123
G+ C + GGC+ +CV +G S ++++ C DG C
Sbjct: 271 GAACLPINPCHGANRGGCEGRAICVYTGPGKSICRCPASYKLDESQARCTLCPDGNC 327
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = -1
Query: 332 GGCSHDGSVCSHDGSVCG-DNRCVSSYHSGGCDP--NGVCVRSGDRHSSF 192
GGC DG C CG D C + + + CD N V ++ SF
Sbjct: 1174 GGCLFDGFDCKPSVPKCGADKYCAARFANAECDAICNNVACQNDGLDCSF 1223
>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
Length = 1259
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -1
Query: 227 VCVRSG-DRHSSFYYSSAHQWGADDTMAPRCGDGRCNRHTIWSWSSRGDGQESGEYN 60
+C G R F + G D G+G N H I + + D E G YN
Sbjct: 179 LCTEFGLPRKPDFRWKGGRNHGLGDVFVFYPGEGYRNVHVIRGYDTAADYDEGGTYN 235
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -1
Query: 284 CGDNRCVSSYHSGGCD--PNGVCVRSGDRHSSFYYSSAH 174
C + + +S H G CD N VC + D Y S H
Sbjct: 987 CAEQKEISVKHKGACDACSNHVCEENEDCDKKTYQSECH 1025
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 311 SVCSHDGSVCGDNRCVSSYHSGGCDPNGVCV 219
S C S C D + V H+G C P G V
Sbjct: 384 SECIMKTSACADKKAVRVKHAGECGPCGTLV 414
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 350 LPAVGIGGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFY 189
+P G G ++ G+ C S C + V+ + G C+ N C G R FY
Sbjct: 1304 MPVCGTDGKTY-GNKCEMRASACLKSTMVTVAYPGECESNDPC---GKRRCGFY 1353
>SB_53799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 309 RVQPRWERVRRQSVREQLPQRGMRS*RCLRKKWRPAQQFL--LLQRSPVGR 163
RV+P R R + E+L +R + + C+R++W + + L R P+GR
Sbjct: 8 RVEP--PRKARVCLSEKLQKRQVEADACMRQEWETVHKRVRALQTRMPIGR 56
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Frame = +3
Query: 102 GPYGVPIA-APIAAPWGHGIVSA-PLVSAGVVK-TAVPVATSYANTV 233
GP VPI AP++ + V+ P S G+V T VP+ATSY++ V
Sbjct: 390 GPMFVPIQRAPMSNGYAQVAVNGYPGYSTGMVAPTYVPMATSYSSPV 436
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 329 GCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSG 210
GC+ G +CS +CG + + G C P G C R G
Sbjct: 1477 GCAGRGILCSTQMGICGYDDDQIKRYCGVCYP-GYCSRHG 1515
>SB_32684| Best HMM Match : Extensin_2 (HMM E-Value=0.96)
Length = 201
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 208 SPLLTQT--PLGSHPPLW*LLTHRLSPHTLPSWLHTLPSWLHPPMPTAGKPVTIRTTTKL 381
+PL+ + P+ + PPL + + L ++ P + +LP ++ P P P + +T L
Sbjct: 75 TPLMVNSTPPMVNSPPLM-VNSTPLRVNSTPQMVDSLPPIVNSPPPMVNSPPLMVNSTPL 133
Query: 382 VIKRIKPL 405
++ P+
Sbjct: 134 MVNSTPPM 141
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 241 HPPLW*LLTHRLSPHTLPSWLHTLPSWLHPPMPTAGKP 354
+PP + HR H P + +P+ PP PT G P
Sbjct: 1873 YPPRGAPMMHRGRGHPPPQYTGGVPAHRAPPAPTRGGP 1910
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,201,351
Number of Sequences: 59808
Number of extensions: 398395
Number of successful extensions: 1318
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -