Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0344
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    32   0.24 
Z81107-1|CAB03225.1|  258|Caenorhabditis elegans Hypothetical pr...    31   0.43 
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    30   0.98 
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    30   1.3  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.0  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.0  
Z73910-4|CAA98136.1|  662|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   9.1  
AF025461-8|AAB71000.1|  286|Caenorhabditis elegans Hypothetical ...    27   9.1  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   9.1  

>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 341 VGIGGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCV 219
           V +GG       C ++ +VC +N CVS++ S  C  N VC+
Sbjct: 352 VQVGGSCSFSQQCLNN-AVCTNNICVSTFCSVSCSTNQVCI 391


>Z81107-1|CAB03225.1|  258|Caenorhabditis elegans Hypothetical
           protein R07H5.1 protein.
          Length = 258

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 259 LLTHRLSPHTLPSWLHTLPSWLHPPMPTAGKPVTIRTTTK 378
           L  H  +P   PS   ++PSW     PT+   +T  TT++
Sbjct: 191 LSQHNFAPIVTPSVTSSIPSWQQSATPTSATSITTTTTSE 230


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +1

Query: 286 TLPSWLHTLPSWLHPPMPTAGKPV----TIRTTTKLVIKRIKPLKCNSQLT 426
           TL +   TLP  + PP P   KP+    T RTTT+   KR+   K  + LT
Sbjct: 306 TLKTTTKTLP--VIPPRPNVTKPITRSTTKRTTTRSTTKRLTTTKATTVLT 354


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 332  GGCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCV 219
            GG   DG++     SVC +N C+     G    NG CV
Sbjct: 1442 GGACEDGTILCTGNSVCANNVCICP--GGETVQNGTCV 1477


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 326  CSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFYYSS 180
            C  +   C+     C +  C+ S  +  CD +  C+   D H++  YSS
Sbjct: 3093 CKTEKKECNKGEFRCSNQHCIHS--TWECDGDNDCLDGSDEHANCTYSS 3139



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 329  GCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHS 198
            GC+  G  CS D   CG+ RC+   ++  CD    C    D  S
Sbjct: 1306 GCT-SGRQCSSDQFKCGNGRCI--LNNWLCDGENDCGDGSDESS 1346


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 326  CSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHSSFYYSS 180
            C  +   C+     C +  C+ S  +  CD +  C+   D H++  YSS
Sbjct: 3093 CKTEKKECNKGEFRCSNQHCIHS--TWECDGDNDCLDGSDEHANCTYSS 3139



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 329  GCSHDGSVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGDRHS 198
            GC+  G  CS D   CG+ RC+   ++  CD    C    D  S
Sbjct: 1306 GCT-SGRQCSSDQFKCGNGRCI--LNNWLCDGENDCGDGSDESS 1346


>Z73910-4|CAA98136.1|  662|Caenorhabditis elegans Hypothetical
           protein M117.4 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 105 PYGVPIAAPIAAPWGHGIVSAPLVSAGVVKTAVPVA 212
           P   P+  P AAP     +SAP+ S G   +AVP A
Sbjct: 162 PLAKPLPPPSAAPPPVAPLSAPVPSTGAPPSAVPPA 197


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical
           protein F57C7.1b protein.
          Length = 1087

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 226 TPLGSHPPLW*LLTHRLSPHTLPSWLHTLPSW 321
           TP+ +HP        R +P+TL  W H +P W
Sbjct: 520 TPVAAHPQEE--TPRRKNPNTLIEWKHLVPRW 549


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical
           protein F57C7.1a protein.
          Length = 1209

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 226 TPLGSHPPLW*LLTHRLSPHTLPSWLHTLPSW 321
           TP+ +HP        R +P+TL  W H +P W
Sbjct: 520 TPVAAHPQEE--TPRRKNPNTLIEWKHLVPRW 549


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 311 SVCSHDGSVCGDNRCVSSYHSGGCDPNGVCVRSGD--RHSSFYYS 183
           S     G  C +NRC SSY +   + N     SG   R+S+  YS
Sbjct: 92  SYSCRSGETCMNNRCQSSYSNNMYNSNSQYSNSGSTCRYSTDCYS 136


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 323 SHDGSVCSHDGSVCGDNRCVSS 258
           +++GS C H  + CG + CVS+
Sbjct: 264 NNEGSTCLHWAARCGSSECVST 285


>AF025461-8|AAB71000.1|  286|Caenorhabditis elegans Hypothetical
           protein M01D1.9 protein.
          Length = 286

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -1

Query: 530 RSMFYYTNTMAQQSNLLQAKFF---QYDIPNFL 441
           ++ FY+ N +    NLLQ + F   Q+D+ +FL
Sbjct: 70  KATFYFENGLVTAYNLLQTRIFSVPQFDVRSFL 102


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 323 SHDGSVCSHDGSVCGDNRCVSS 258
           +++GS C H  + CG + CVS+
Sbjct: 262 NNEGSTCLHWAARCGSSECVST 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,338,619
Number of Sequences: 27780
Number of extensions: 279114
Number of successful extensions: 947
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)