Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0344
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37520.1 68415.m04601 PHD finger family protein contains Pfam...    31   0.69 
At2g15770.1 68415.m01808 glycine-rich protein contains a domain ...    30   0.91 
At2g26910.1 68415.m03228 ABC transporter family protein similar ...    30   1.2  
At4g13670.1 68417.m02125 peptidoglycan-binding domain-containing...    29   2.1  
At4g03230.1 68417.m00442 S-locus lectin protein kinase family pr...    29   2.1  
At5g62130.1 68418.m07798 Per1-like protein-related                     29   2.8  
At3g03680.1 68416.m00371 C2 domain-containing protein contains I...    28   4.9  
At5g18290.1 68418.m02150 major intrinsic protein-related / MIP-r...    27   8.5  

>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 854

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
 Frame = -1

Query: 374 VVVRI--VTGLPAVGIGGC----SHDGSVCSHDG-SVCGDNRCVSSYHSGGCDPNGVC 222
           +V+R+  V   P   IGGC    SHD S+   D  +V   ++C   YH G    NG C
Sbjct: 557 IVIRLSRVVKAPESDIGGCVFCRSHDFSIGKFDDRTVILCDQCEKEYHVGCLRENGFC 614


>At2g15770.1 68415.m01808 glycine-rich protein contains a domain
           related to blue copper-binding protein; similar to
           Stellacyanin (SP:P00302) {Rhus vernicifera}
          Length = 301

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 197 SFYYSSAHQWGADDTMAPRCGDGRCNRHTIWSWSSRGDGQESG 69
           S+ Y S   WG+D +     G G  +  + WSW S  D   SG
Sbjct: 31  SWSYGSGWGWGSDGSSTSSSGTGSDSDGSSWSWGS-DDNSGSG 72


>At2g26910.1 68415.m03228 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1420

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +1

Query: 259 LLTHRLSPHTLPSWLHTLPSWL 324
           L  HR   H  PSW +TLPSWL
Sbjct: 569 LYKHR-DLHFYPSWAYTLPSWL 589


>At4g13670.1 68417.m02125 peptidoglycan-binding domain-containing
           protein similar to spore cortex-lytic enzyme prepeptide
           (GI:1644192) [Bacillus cereus]; contains Pfam PF01471:
           Putative peptidoglycan binding domain; contains Pfam
           PF00684 : DnaJ central domain (4 repeats)
          Length = 387

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 378 FSCCSDCYWFTSRGHRRVQPRWERVQPRWERVRRQSVREQLPQRGMR 238
           FS  S    F+++   R + RW R + RW R  ++ +RE+  QR +R
Sbjct: 33  FSIPSSIVCFSTQNPDREEVRWLREEQRWIREEQRWIREE--QRWIR 77


>At4g03230.1 68417.m00442 S-locus lectin protein kinase family
           protein contains Pfam domins, PF00069: Protein kinase
           domain, PF00954: S-locus glycoprotein family and
           PF01453: Lectin (probable mannose binding)
          Length = 852

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 332 GGCSHDGSVCSHDGSVCGD 276
           GGCS +  +C  DG V GD
Sbjct: 330 GGCSRESRICGKDGVVVGD 348


>At5g62130.1 68418.m07798 Per1-like protein-related
          Length = 343

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 113 CAYCSAHRRTLGPWYRQRPTGERWSSKNC 199
           C + +  +   GPWY Q P   RW   +C
Sbjct: 53  CKFSADGKAIDGPWYMQEPLYLRWKQWDC 81


>At3g03680.1 68416.m00371 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1017

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 286 TLPSWLHTLPSWLHPP 333
           T+  W+H + +W+HPP
Sbjct: 826 TIARWIHGIRTWVHPP 841


>At5g18290.1 68418.m02150 major intrinsic protein-related /
           MIP-related contains weak similarity to Pfam profile:
           MIP PF00230; annotated based on segmental duplication
          Length = 243

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 108 YGVPIAAPIAAPWGHGIVSAPLV-SAGVVKTAVPVATSYANTV 233
           +G+  AA ++A   HGI  APLV S  VV  ++ + T   N +
Sbjct: 24  FGIQTAAIVSAVGFHGITWAPLVISTLVVFVSISIFTVIGNVL 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,642,636
Number of Sequences: 28952
Number of extensions: 256369
Number of successful extensions: 729
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)