Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0343
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 34 0.027
SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc... 32 0.11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 29 0.59
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 29 0.59
SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.4
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 27 3.1
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun... 27 3.1
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 26 7.2
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 7.2
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 7.2
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 9.6
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 33.9 bits (74), Expect = 0.027
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Frame = +3
Query: 327 YNHKEVVTQNLFFANGDKWKVVRQNLTPLFSSLKMKNMFYLVEKCNHSLEDMLDKEIKDL 506
YN V T + F ++ + P+F + K YL++ H DML ++ +L
Sbjct: 1550 YNESMVGTTSSFLDKVPDGIFLKTSRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQ-NNL 1608
Query: 507 QIIEIRSAMIRYT--LDSICSSAFGIESNTLREGGENSPFANMGSIVF---SSSITRGLK 671
+ EI + ++ L +ICS + + E EN+ A GS + S G
Sbjct: 1609 KQSEIWFVLNDFSLVLATICSCLGNLLNLVTDEDIENAMSALEGSNAVQATTESEATGAD 1668
Query: 672 WISRSMWPAYSTSLVSSAFQRRLTVSL 752
W+ ++M YST+L S + ++ ++L
Sbjct: 1669 WM-QNMNGNYSTTLASPELEEKMDMNL 1694
>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/68 (30%), Positives = 38/68 (55%)
Frame = -1
Query: 272 DDLRILQD*GWFRAVKRSEVRSVRELLAQLLRHISYVTLQSDISHVIPKERHRFSVWHIF 93
+ + IL+D R++K S+VRSV + +++ L + S TL+S ++P R S+ F
Sbjct: 14 EQIAILRD----RSLKPSQVRSVVDEISRFLAYESTKTLKSPSVSIVPVLRSGMSMMSAF 69
Query: 92 SLPIIEFP 69
S + + P
Sbjct: 70 SKVLPDVP 77
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 29.5 bits (63), Expect = 0.59
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 279 VFTKDFYYFNSRDNSDY--NHKEVVTQNLFFANGDKWKVVRQNLTPLFSSLKM 431
+ T+DF ++ +SD + +E+ +N FFA GDK K + F S+ +
Sbjct: 214 ISTQDFNSDSAAGSSDSEEDEEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNL 266
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 29.5 bits (63), Expect = 0.59
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -2
Query: 727 KALETKLVEYAGHIER---LIHFSPRVIEELNTMLPMFAKGLFS 605
KAL ++V++ G IER ++ P ++E LN LP K L S
Sbjct: 65 KALHNEIVDFPGFIERISVILRDYPDLLEYLNIFLPSSYKYLLS 108
>SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 95
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 333 HKEVVTQNLFFANGDKWKVVRQNLTPLFSSLKMK 434
HK + +NL F DK + +R N + L S+++M+
Sbjct: 27 HKNDILENLAFELSDKVRRLRSNASLLASTIRMR 60
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -2
Query: 763 QDSLKETVNLRWKALETKLVEYAGHIERLIHFSPRVIE-ELNTMLPMFAKGLFSPPSLKV 587
Q E +N+ + A+ + + + R I PR++ + + + P+F GL + PS++V
Sbjct: 134 QGEWPELINVIFNAVNSPDESFRESVFRTITSLPRLLSGQDSAVTPLFTTGL-ADPSIRV 192
Query: 586 LLSIPKALEQI 554
+S +A +
Sbjct: 193 RISAARAYSAV 203
>SPCC11E10.07c |||translation initiation factor eIF2B alpha
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 582 SNTLREGGENSPFANMGSIVFSSSITRGL 668
SNTL+EG +N+ + G +F +TR L
Sbjct: 66 SNTLKEGVQNNISLSAGCDIFQRFVTRSL 94
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 201 PDRPYFGSFYGTEPALVLQNPEIIKQVFTKDF 296
P PY+ + GT P L + ++K+ F D+
Sbjct: 205 PSNPYYFAIGGTHPYAFLYDRRMVKKSFRDDW 236
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 12 ALVFAAFVLLVTYIYYWS-TRKFDYWKRKNVPYAKPVPF 125
A+V A VLL + +Y+WS RK R NV PF
Sbjct: 501 AVVVLAGVLLFSLVYWWSGARKSYIGPRINVDMESEDPF 539
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 600 GGENSPFANMGSIVFSSSITRGLKWISRSMWPAYS 704
G + + N +VF + +T G W+S S P S
Sbjct: 334 GTSSGDYGNWSPLVFGAGMTDGTTWLSISQNPLTS 368
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 673 HFSPRVIEELNTMLPMFAKGLFSPPSLKVLLS 578
HFS +EE +T+ P G F+P + K L S
Sbjct: 82 HFSSSPVEESSTVSPETTTGSFTPLNNKHLKS 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,296
Number of Sequences: 5004
Number of extensions: 72284
Number of successful extensions: 241
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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