Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0342
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.3  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   5.4  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   7.1  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +3

Query: 468 KLVTRPLELLFSLVKRENYVSAVSKLNILVF 560
           KL+ +P+++LF+  K ++   ++ + N+L+F
Sbjct: 5   KLLLKPVQILFAYAKAKSKEISIKEANLLIF 35


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 390 GKRHFDVNFERHVESDHVVDMMTEK 316
           GK ++D  FER  E+D ++D +  +
Sbjct: 57  GKTNYDKRFERGSEADELIDQLLSR 81


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -2

Query: 694 LSIVTTAAPPFKPKTHYCFTAEIGRVVVPTRADSQEVLPQIGIRGKT 554
           LS+ TT  P FK         ++   V    ADS + L   G  G+T
Sbjct: 111 LSVTTTGLPKFKNIVDCTGAGDVDTSVEVAAADSNDYLTITGRSGRT 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,538
Number of Sequences: 5004
Number of extensions: 63476
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)