Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0342
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0627 - 35172246-35172349,35172903-35173005,35173107-351731...    30   1.8  

>03_06_0627 -
           35172246-35172349,35172903-35173005,35173107-35173190,
           35173504-35173599,35173686-35173736,35173805-35173945,
           35174098-35174154,35175089-35175163,35176255-35176527,
           35176608-35176667,35176754-35176846,35177196-35177348
          Length = 429

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +3

Query: 342 DRFQHGVQNLHQNVVFLYNILYTYMICSETG---QCVT*CHPDI 464
           +R       ++Q V  +Y  LYTY IC        CV  CH DI
Sbjct: 169 NRIARQYSRMNQRVPLIYVKLYTYQICRALAYIHNCVGICHRDI 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,282,119
Number of Sequences: 37544
Number of extensions: 414772
Number of successful extensions: 904
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)