Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0342
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6)             32   0.46 
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)     29   4.3  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_30560| Best HMM Match : Herpes_UL73 (HMM E-Value=4.5)               28   7.5  
SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     28   10.0 

>SB_45626| Best HMM Match : Equine_IAV_S2 (HMM E-Value=6.6)
          Length = 315

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 324 SSCLPH--DRFQHGVQNLHQNVVFLYNILYTYMICSETGQC 440
           S C PH  DR +  ++ L Q+  F +++LY + + SE  QC
Sbjct: 214 SHCPPHFTDRSRQMLRELLQSPYFFFDVLYVHELPSENNQC 254


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +3

Query: 453 HPDINKLVTRPLEL---LFSLVKRENYVSAVSKLNILVFPLIPIC--GRTSC 593
           H D+  L  + L     L SLV R+N +   SK  IL+  LIP+C  G+  C
Sbjct: 588 HDDLLTLFAQSLRQWHNLESLVLRDNAIGFQSKGKILIDALIPLCLKGKLKC 639


>SB_9125| Best HMM Match : Sulfotransfer_2 (HMM E-Value=1.4013e-45)
          Length = 480

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 175 NGRSFDFNLIFRVSYLNRKKTEPFDHFVVRPSVCLSVRIQIK 50
           N  +   + IF+   + +K   PF +  +RPS+CLS+ + ++
Sbjct: 33  NETNLQMSEIFKTKRV-KKSIRPFLYLPIRPSLCLSIYLSVR 73


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 620  PAYFCREAVMRFRFEGWGSRCNYTEILKLISQGG 721
            P YFCRE      +   G  CNYT     I  GG
Sbjct: 3003 PKYFCREGAKYETYCPAGRFCNYTTAEPYICPGG 3036


>SB_30560| Best HMM Match : Herpes_UL73 (HMM E-Value=4.5)
          Length = 87

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 314 LLFA*GMMILTQVMMKAQVTTATTIKCTPLAPTPRPHQVFTSPTT 180
           ++ A  ++I+T + +   +TT TT+  T L P+P P     SP T
Sbjct: 14  IIIAITIIIITTITITT-ITTNTTLPSTSLPPSPSPSPSPPSPPT 57


>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +2

Query: 668 WGSRCNYTEILKLISQGGWRIYVVD 742
           WGS C +++++++ + GG+ +Y +D
Sbjct: 127 WGSICQWSQMIRVKNCGGFYVYELD 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,439,160
Number of Sequences: 59808
Number of extensions: 470861
Number of successful extensions: 1033
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)