Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0342
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 261 LSFHHHLSQNHHPLR 305
           L  HHHL  +HH L+
Sbjct: 138 LQRHHHLQNHHHHLQ 152


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 450 CHPDINKLVTRPLELLF 500
           CHPDI + V + L+ +F
Sbjct: 366 CHPDIQEKVIQELDEIF 382


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/34 (20%), Positives = 19/34 (55%)
 Frame = +1

Query: 307 NNKFFRHHVYHMIAFNMAFKIYIKMSFSYITFYI 408
           + +++ H   +  + ++ FK+  +M F  + +YI
Sbjct: 207 SQQYYGHFAGNFSSISITFKLAREMGFFMMDYYI 240


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 81  PSVCLFVFRLNIIR 40
           P++C+ VF  NII+
Sbjct: 500 PAICVGVFTFNIIK 513


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 81  PSVCLFVFRLNIIR 40
           P++C+ VF  NII+
Sbjct: 553 PAICVGVFTFNIIK 566


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 668  TLQTENALLLHGRNRQGGGTYPRGLT 591
            T  T +++LLH ++   GG    G T
Sbjct: 1413 TSSTSSSILLHWKSGHNGGASLTGYT 1438


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 668  TLQTENALLLHGRNRQGGGTYPRGLT 591
            T  T +++LLH ++   GG    G T
Sbjct: 1409 TSSTSSSILLHWKSGHNGGASLTGYT 1434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,254
Number of Sequences: 438
Number of extensions: 4614
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)