BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0342 (791 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 31 1.2 At3g62440.1 68416.m07014 F-box family protein contains F-box dom... 28 6.2 At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS... 28 8.2 At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS... 28 8.2 At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing... 28 8.2 >At3g15120.1 68416.m01913 AAA-type ATPase family protein contains PROSITE domains, PS00674: AAA-protein family signature and PS00017: ATP/GTP-binding site motif A (P-loop) Length = 1954 Score = 30.7 bits (66), Expect = 1.2 Identities = 19/52 (36%), Positives = 28/52 (53%) Frame = +3 Query: 396 NILYTYMICSETGQCVT*CHPDINKLVTRPLELLFSLVKRENYVSAVSKLNI 551 +++ Y CS QCV+ ++KLVTR L L S + E AVS L++ Sbjct: 1787 SLVCLYRCCS---QCVSILQDSMHKLVTRELRLGRSSITTEGIHDAVSSLSV 1835 >At3g62440.1 68416.m07014 F-box family protein contains F-box domain Pfam:PF00646 Length = 457 Score = 28.3 bits (60), Expect = 6.2 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = -3 Query: 429 SPSISYMYIKCYIGKRHFDVNFERHVES 346 +PS++Y+Y Y+ K + VN + VE+ Sbjct: 244 TPSLAYLYYSDYVPKEYLSVNLDSLVET 271 >At3g61160.2 68416.m06845 shaggy-related protein kinase beta / ASK-beta (ASK2) identical to shaggy-related protein kinase beta SP:O23145 GI:2569931 from [Arabidopsis thaliana] Length = 438 Score = 27.9 bits (59), Expect = 8.2 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = +3 Query: 345 RFQHGVQNLHQNVVFLYNILYTYMICSETG---QCVT*CHPDINKLVTRPLELLFSLVKR 515 R ++Q++ +Y LYTY IC Q V CH DI +P LL + V Sbjct: 193 RASRSYTKMNQHMPLIYIQLYTYQICRAMNYLHQVVGVCHRDI-----KPQNLLVNNVTH 247 Query: 516 ENYVSAVSKLNILV 557 E + +L+ Sbjct: 248 EVKICDFGSAKMLI 261 >At3g61160.1 68416.m06844 shaggy-related protein kinase beta / ASK-beta (ASK2) identical to shaggy-related protein kinase beta SP:O23145 GI:2569931 from [Arabidopsis thaliana] Length = 431 Score = 27.9 bits (59), Expect = 8.2 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Frame = +3 Query: 345 RFQHGVQNLHQNVVFLYNILYTYMICSETG---QCVT*CHPDINKLVTRPLELLFSLVKR 515 R ++Q++ +Y LYTY IC Q V CH DI +P LL + V Sbjct: 186 RASRSYTKMNQHMPLIYIQLYTYQICRAMNYLHQVVGVCHRDI-----KPQNLLVNNVTH 240 Query: 516 ENYVSAVSKLNILV 557 E + +L+ Sbjct: 241 EVKICDFGSAKMLI 254 >At3g18270.1 68416.m02324 mandelate racemase/muconate lactonizing enzyme family protein low similarity to cis,cis-muconate lactonizing enzyme [Burkholderia sp. TH2] GI:23491535; contains Pfam profile: PF01188 Mandelate racemase/muconate lactonizing enzyme, C-terminal domain, PF02746: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Length = 410 Score = 27.9 bits (59), Expect = 8.2 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = +3 Query: 657 GLKGGAAVVTILRS*NLYLKVGGAFTL*MSMGSSNHLTSG 776 G+ V+ + RS + L +GG ++MG S HL +G Sbjct: 321 GILESLEVIELARSSGIELMIGGMVETRLAMGFSGHLAAG 360 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,326,750 Number of Sequences: 28952 Number of extensions: 335194 Number of successful extensions: 700 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 680 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 699 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1785055200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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