Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0340
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   1.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    25   8.3  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 457 NKANYACKSFDVAAPMKKPASPTYQVVKQQEQKKDYGSWGPVFKDKK 317
           N A      F  +AP  + A  TYQ++K+ E   +  ++GP++ + K
Sbjct: 409 NDATKRKLDFMSSAPGWEDAYQTYQLLKEYESAFEAPAYGPIYMNLK 455


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 222  NFFIPCHCQIKNRLLNVSVTRFASFFLVFVKILIISSVSPDEFYFVLKVC 73
            NFF+     + N L + S        L  +++L+  S  PDEF F  + C
Sbjct: 1315 NFFLELLHSLNNGLPSDSHKTSIVCILYLLEVLLADSKKPDEFEFNSEDC 1364


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 437 ASVIGLVGGLAFISTSHGC 493
           A VIG +G   +++ +HGC
Sbjct: 327 APVIGKIGSSIYVAAAHGC 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,523
Number of Sequences: 5004
Number of extensions: 44761
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)