Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0340
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)         29   2.8  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   2.8  
SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_42597| Best HMM Match : 7tm_1 (HMM E-Value=7.1e-22)                 29   3.8  
SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)                 28   5.0  

>SB_47264| Best HMM Match : Ion_trans (HMM E-Value=1.19951e-42)
          Length = 1172

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -3

Query: 288 HDIEPVFIIIALSLSIVTSLYYNFFIPCHCQIKNRLLNVSVTRFASFFLVFVKILIISSV 109
           HD EP    +A++ + VT       +   C   NRL    + RF S     +K+LI  SV
Sbjct: 663 HDPEPT--CVAMNPTCVTMNPTCVTLNPTCMTLNRLAQSCMDRF-SIEQQRLKLLIRKSV 719

Query: 108 SPDEFYFVLKVCV 70
               FY+ + +CV
Sbjct: 720 KSQWFYWTVLICV 732


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 472 ECKTANKANYACKSFDVAAPMKKPASPTYQVVKQQEQKKDYG 347
           +C T     Y+C++ D   P  +  +PTY+   Q+ Q ++ G
Sbjct: 136 QCNTRGHTAYSCRARDSRIPNPRNQNPTYRPFFQRPQWQNNG 177


>SB_40529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 472 ECKTANKANYACKSFDVAAPMKKPASPTYQVVKQQEQKKDYG 347
           +C T     Y+C++ D   P  +  +PTY+   Q+ Q ++ G
Sbjct: 437 QCNTRGHTAYSCRARDSRIPNPRNQNPTYRPSFQRPQWQNNG 478


>SB_42597| Best HMM Match : 7tm_1 (HMM E-Value=7.1e-22)
          Length = 347

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/50 (24%), Positives = 28/50 (56%)
 Frame = -3

Query: 270 FIIIALSLSIVTSLYYNFFIPCHCQIKNRLLNVSVTRFASFFLVFVKILI 121
           F++ A+++    +LYY+   P    ++  +    VT FAS F++ +++ +
Sbjct: 119 FVVTAIAVDRFLALYYHLRYPTIMTMRKAVAVSLVTWFASLFVIALRLTV 168


>SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 410 EEASFTNLSGGQAAGTEERLRFLGASFQGQEDF 312
           EE   TN +GG A   +E L    ASF  QE+F
Sbjct: 193 EEKRLTNTNGGSANAMDEPLSAGVASFIAQEEF 225


>SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)
          Length = 222

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 472 ECKTANKANYACKSFDVAAPMKKPASPTYQVVKQQEQKKDYG 347
           +C T     Y+C++ D   P  +  +P Y+   Q+ Q ++ G
Sbjct: 172 QCNTRGHTAYSCRARDSRIPKPRNQNPNYRTSLQRPQWQNNG 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,718,232
Number of Sequences: 59808
Number of extensions: 348901
Number of successful extensions: 1725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)