Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0340
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81475-4|CAB03911.1|  323|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    28   4.3  
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    28   4.3  
Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z75545-5|CAA99883.3|  836|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF318607-1|AAK01095.1|  398|Caenorhabditis elegans ionotropic gl...    27   7.5  

>Z81475-4|CAB03911.1|  323|Caenorhabditis elegans Hypothetical
           protein C24H11.4 protein.
          Length = 323

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = -3

Query: 252 SLSIVTSLYYNFFIPCHCQIKNRLLNVSVTRFASFFLVFVKILIISSVSPDEF 94
           +LSI+ S+YY + + CH + +N  L+     F    ++ V +L+   + P +F
Sbjct: 105 NLSILLSMYYRYSLICHGKCENLALS---RNFGVTLVISVGMLVAILIPPYDF 154


>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 408 RSQLHQLIRWSSSRNRRKTTVPGGQFSRTRRLSLTCTYAEHDIE 277
           +S +  L  W +  +R   T P   FSR R +S+T    +HDI+
Sbjct: 228 QSTVKSLDGWRTRTSRSIMTTPEA-FSRVRHISITFGEQQHDID 270


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 408 RSQLHQLIRWSSSRNRRKTTVPGGQFSRTRRLSLTCTYAEHDIE 277
           +S +  L  W +  +R   T P   FSR R +S+T    +HDI+
Sbjct: 289 QSTVKSLDGWRTRTSRSIMTTPEA-FSRVRHISITFGEQQHDID 331


>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -3

Query: 282 IEPVFIIIALSLSIVTSLYYNFFIPCHCQ-IKNRLLNVSVTR-FASFFLVFVKILIIS 115
           + P+F+ I L    V  ++  FF P H   +K  LL  S+   FA+  L +++  I+S
Sbjct: 23  VYPIFLTITLIFHSVLLVFIIFFSPSHLNFLKFLLLTTSLLDVFATSILFYIQPRILS 80


>Z75545-5|CAA99883.3|  836|Caenorhabditis elegans Hypothetical
           protein K10D3.1 protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 174 VSVTRFASFFLVFVKILIISSVSPDE 97
           V +  FAS+F+V V I II+ +SP E
Sbjct: 525 VWIMTFASYFVVSVAIWIIAKISPYE 550


>AF318607-1|AAK01095.1|  398|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-3 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 174 VSVTRFASFFLVFVKILIISSVSPDE 97
           V +  FAS+F+V V I II+ +SP E
Sbjct: 121 VWIMTFASYFVVSVAIWIIAKISPYE 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,220,997
Number of Sequences: 27780
Number of extensions: 259753
Number of successful extensions: 622
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)