Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0340
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   1.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.0  

>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 267 IIIALSLSIVTSLYYNFFIPCHCQ 196
           I + LS+ ++TS +    +PC+C+
Sbjct: 8   IYLFLSVILITSYFVTPVMPCNCK 31


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +1

Query: 340 PRNRSLSSVPAA*PPDKLVKLASS*ERPHQKTCK 441
           P +  +S VP+  P D  + +  +   P +K CK
Sbjct: 438 PSSNPVSPVPSPDPLDLAIPVRETLILPPRKRCK 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,393
Number of Sequences: 438
Number of extensions: 3185
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)