Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0339
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25960.1 68418.m03088 hypothetical protein various predicted ...    29   4.5  
At4g37100.1 68417.m05255 hypothetical protein                          28   7.9  

>At5g25960.1 68418.m03088 hypothetical protein various predicted
           proteins, Arabidopsis thaliana contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 352

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 431 LLLNFFSERTNNSFLDIGMKIMTLKNPRLSRISS 532
           +L  F++E      LDI MK+ +L  P L  I S
Sbjct: 9   ILCGFYNEAYGKGSLDIDMKLKSLNKPSLKTIKS 42


>At4g37100.1 68417.m05255 hypothetical protein
          Length = 896

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +1

Query: 316 FLMFRNILQFLSSRTSKALFIRRHFNISLTSVNIKKKDITFEFLFRTN*QQLLGHRNENN 495
           F +++ I    S    K+   RR  + S +S+N+KKK      L+    ++ L   +EN 
Sbjct: 3   FSLWKQIHHCASLILDKSKSSRRRRDGSDSSLNVKKKAALIRKLYEDKLREALEEASENG 62

Query: 496 DIKKSE 513
            + KS+
Sbjct: 63  SLFKSQ 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,980,694
Number of Sequences: 28952
Number of extensions: 252333
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)