Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0338
(811 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 48 2e-05
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 42 8e-04
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 40 0.003
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 40 0.003
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 39 0.007
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 39 0.007
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 37 0.038
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 36 0.050
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 36 0.050
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 36 0.050
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 36 0.050
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 36 0.050
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 36 0.050
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 36 0.066
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 33 0.46
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 31 1.4
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 31 1.4
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 31 1.4
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 31 1.4
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 31 1.9
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 29 5.7
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 48.0 bits (109), Expect = 2e-05
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXXK-QYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LL +LSK++E+ I Q+GF +G ST++ L K+I QA+++
Sbjct: 519 LLSSLSKLWERLIANRLNDIMTERRILPDHQFGFRQGHSTVEQVHRLTKHILQAFDDKEY 578
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKLHHYGIRGVSLELIKSYLFQKNPKVDVK 797
VF D+ +AFD V H+ L+ K+ ++KSYL + V V+
Sbjct: 579 CNAVFIDMQQAFDRVWHDGLISKVKKL-FPAPYYGVLKSYLEDRRFMVRVR 628
Score = 29.1 bits (62), Expect = 7.5
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +2
Query: 221 IGIKDIIGYFKLINIKKTGDLWGLXXXXXXXXXXXXAPYLATIFNDCIDCGVFPDLMKYS 400
I +++I+ K + +KK+ + + YLA I+N + FP K +
Sbjct: 437 IRVEEIVEAIKSLPLKKSPGIDNVCNATLKALPVRAILYLALIYNAILRVQFFPKQWKMA 496
Query: 401 KIIPLFKSGSTFDH-SNLRPISV 466
I+ + K G + + RPIS+
Sbjct: 497 AILMIHKPGKPEESPESYRPISL 519
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 42.3 bits (95), Expect = 8e-04
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXXK-QYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LLP++SK+FE+ I + Q+GF G T++ +++ I A++
Sbjct: 518 LLPSISKVFERLIAVRIVSIMEAQGITPEHQFGFRAGHCTVEQLHRVVEQILTAYDSKEY 577
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKLHHYGIRGVSLELIKSYL 767
+F D+ +AFD V H L K+ + L+KSYL
Sbjct: 578 CNSLFLDIREAFDRVWHIGLQLKIKQ-TLPAPYFGLLKSYL 617
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 40.3 bits (90), Expect = 0.003
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXXK-QYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LLP+L KI E+ I K Q+GF T + ++ +A E
Sbjct: 520 LLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEY 579
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKLHHYGIRGVSLELIKSYLFQKNPKVDVKG 800
A+G F D+ +AFD V H L+ K + L ++KS+L ++ V V G
Sbjct: 580 AVGAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYL-VVKSFLEERTFHVSVDG 630
Score = 36.7 bits (81), Expect = 0.038
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 YLATIFNDCIDCGVFPDLMKYSKIIPLFKSGST-FDHSNLRPISV 466
+LA IFN +D G FP K + II + K+G T D + RP S+
Sbjct: 476 FLALIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPTSL 520
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 40.3 bits (90), Expect = 0.003
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXXK-QYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LLP+L KI E+ I K Q+GF T + ++ +A E
Sbjct: 322 LLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEY 381
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKLHHYGIRGVSLELIKSYLFQKNPKVDVKG 800
A+G F D+ +AFD V H L+ K + L ++KS+L ++ V V G
Sbjct: 382 AVGAFLDIQQAFDRVWHPGLLYKAKRLFPPQLYL-VVKSFLEERTFHVSVDG 432
Score = 37.1 bits (82), Expect = 0.028
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 YLATIFNDCIDCGVFPDLMKYSKIIPLFKSGST-FDHSNLRPISV 466
+L IFN +D G FP K + II + K+G T D + RPIS+
Sbjct: 278 FLVLIFNSVLDVGYFPKAWKSASIIMIHKTGKTPTDVDSYRPISL 322
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 39.1 bits (87), Expect = 0.007
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Frame = +2
Query: 134 YKIFNFISDAESLLQDHVDKCSVNFKCTNIGIKDIIGYFKLINIKKTGDLWGLXXXXXXX 313
Y N I + LQ + + + + ++ K ++ +K+ + G+
Sbjct: 432 YSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKN 491
Query: 314 XXXXXAPYLATIFNDCIDCGVFPDLMKYSKIIPLFKSGSTFDH-SNLRPISV 466
++ I N C+ G FP K +KI+P+ K G D+ + RPIS+
Sbjct: 492 LPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISL 543
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 39.1 bits (87), Expect = 0.007
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Frame = +2
Query: 134 YKIFNFISDAESLLQDHVDKCSVNFKCTNIGIKDIIGYFKLINIKKTGDLWGLXXXXXXX 313
Y N I + LQ + + + + ++ K ++ +K+ + G+
Sbjct: 380 YSNQNTIDQVKISLQSIAETPNNIAEICRVTYPEVFSIVKALHTRKSPGIDGIPNISLKN 439
Query: 314 XXXXXAPYLATIFNDCIDCGVFPDLMKYSKIIPLFKSGSTFDH-SNLRPISV 466
++ I N C+ G FP K +KI+P+ K G D+ + RPIS+
Sbjct: 440 LPTSAINHIVNIANHCLQAGYFPRDWKIAKIVPILKPGKPPDNPESYRPISL 491
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 36.7 bits (81), Expect = 0.038
Identities = 25/82 (30%), Positives = 48/82 (58%)
Frame = +3
Query: 552 KQYGFTRGRSTIDAGVDLIKNISQAWEESHNALGVFCDLSKAFDCVEHNTLVRKLHHYGI 731
KQ+GF +G+ST D + + I+++ + H +L V D S+AFD V ++++++L +
Sbjct: 542 KQFGFKKGKSTSDCLLYVDYLITKS--KMHTSL-VTLDFSRAFDRVGVHSIIQQLQEWKT 598
Query: 732 RGVSLELIKSYLFQKNPKVDVK 797
++ IK+ F N K+ V+
Sbjct: 599 GPKIIKYIKN--FMSNRKITVR 618
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 36.3 bits (80), Expect = 0.050
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXX-KQYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LL LSK+FE+ + Q+GF + T + + I +A+E
Sbjct: 447 LLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEY 506
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKL 716
VF D+S+AFD V H L+ KL
Sbjct: 507 CSAVFLDISEAFDRVWHEGLLLKL 530
Score = 33.5 bits (73), Expect = 0.35
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 YLATIFNDCIDCGVFPDLMKYSKIIPLFKSG-STFDHSNLRPISV 466
YL I+N + G +PD K++++ + K G S D + RPIS+
Sbjct: 403 YLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISL 447
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 36.3 bits (80), Expect = 0.050
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXX-KQYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LL LSK+FE+ + Q+GF + T + + I +A+E
Sbjct: 575 LLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEY 634
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKL 716
VF D+S+AFD V H L+ KL
Sbjct: 635 CSAVFLDISEAFDRVWHEGLLLKL 658
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 YLATIFNDCIDCGVFPDLMKYSKIIPLFKSG-STFDHSNLRPISV 466
YL I+N + G +P+ K++++ + K G S+ + + RPIS+
Sbjct: 531 YLILIYNSILRLGYYPEAWKHAQVKMILKPGKSSNEPKSYRPISL 575
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.3 bits (80), Expect = 0.050
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXX-KQYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LL LSK+FE+ + Q+GF + T + + I +A+E
Sbjct: 563 LLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEY 622
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKL 716
VF D+S+AFD V H L+ KL
Sbjct: 623 CSAVFLDISEAFDRVWHEGLLLKL 646
Score = 33.5 bits (73), Expect = 0.35
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 YLATIFNDCIDCGVFPDLMKYSKIIPLFKSG-STFDHSNLRPISV 466
YL I+N + G +PD K++++ + K G S D + RPIS+
Sbjct: 519 YLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISL 563
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.3 bits (80), Expect = 0.050
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXX-KQYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LL LSK+FE+ + Q+GF + T + + I +A+E
Sbjct: 563 LLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEY 622
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKL 716
VF D+S+AFD V H L+ KL
Sbjct: 623 CSAVFLDISEAFDRVWHEGLLLKL 646
Score = 33.5 bits (73), Expect = 0.35
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 YLATIFNDCIDCGVFPDLMKYSKIIPLFKSG-STFDHSNLRPISV 466
YL I+N + G +PD K++++ + K G S D + RPIS+
Sbjct: 519 YLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISL 563
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 36.3 bits (80), Expect = 0.050
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXX-KQYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LL LSK+FE+ + Q+GF + T + + I +A+E
Sbjct: 525 LLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEY 584
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKL 716
VF D+S+AFD V H L+ KL
Sbjct: 585 CSAVFLDISEAFDRVWHEGLLLKL 608
Score = 33.5 bits (73), Expect = 0.35
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 YLATIFNDCIDCGVFPDLMKYSKIIPLFKSG-STFDHSNLRPISV 466
YL I+N + G +PD K++++ + K G S D + RPIS+
Sbjct: 481 YLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISL 525
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 36.3 bits (80), Expect = 0.050
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXX-KQYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LL LSK+FE+ + Q+GF + T + + I +A+E
Sbjct: 563 LLSGLSKMFERLLLKRLFRVDLFKKAIPLHQFGFRKEHGTEQQIARVTQFILEAFERKEY 622
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKL 716
VF D+S+AFD V H L+ KL
Sbjct: 623 CSAVFLDISEAFDRVWHEGLLLKL 646
Score = 33.5 bits (73), Expect = 0.35
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 YLATIFNDCIDCGVFPDLMKYSKIIPLFKSG-STFDHSNLRPISV 466
YL I+N + G +PD K++++ + K G S D + RPIS+
Sbjct: 519 YLILIYNSILRIGYYPDAWKHAQVKMILKPGKSVNDPKSYRPISL 563
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 35.9 bits (79), Expect = 0.066
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 468 LLPTLSKIFEKNIXXXXXXXXXXXXXXX-KQYGFTRGRSTIDAGVDLIKNISQAWEESHN 644
LL LSKIFE+ + Q+GF + + + + I +A+E
Sbjct: 563 LLSGLSKIFERLLLKRLFKVDLFKKAIPLHQFGFRKEHGSEQQIARVTQFILEAFERKEY 622
Query: 645 ALGVFCDLSKAFDCVEHNTLVRKL 716
VF D+S+AFD V H L+ KL
Sbjct: 623 CSAVFLDISEAFDRVWHEGLLLKL 646
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 YLATIFNDCIDCGVFPDLMKYSKIIPLFKSG-STFDHSNLRPISV 466
YL I+N + G +P+ K++++ + K G S + + RPIS+
Sbjct: 519 YLILIYNSILRLGYYPEAWKHAQVKMILKPGKSANEPRSYRPISL 563
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 33.1 bits (72), Expect = 0.46
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 555 QYGFTRGRSTIDAGVDLIKNISQAWEESHNALGVFCDLSKAFDCVEHNTLVRKLHHYGIR 734
Q+GF +GR DA + ++ + + LG F D AFD VE + + +L G R
Sbjct: 544 QFGFRQGRCVEDAWRHVKSSVGAS--AAQYVLGTFVDFKGAFDNVEWSAALSRLADLGCR 601
Query: 735 GVSL 746
+ L
Sbjct: 602 EMGL 605
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 31.5 bits (68), Expect = 1.4
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 203 NFKCTNIGIKDIIGYFKLINIKKTGDLWGLXXXXXXXXXXXXAPYLATIFNDCIDCGVFP 382
NFK + + ++ G + +KK L YL I+N+ + G FP
Sbjct: 33 NFK--PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFP 90
Query: 383 DLMKYSKIIPLFKSG-STFDHSNLRPISV 466
+ K++ I + K G S F ++ RPIS+
Sbjct: 91 NKWKHASISMIPKPGKSPFALNSYRPISL 119
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 31.5 bits (68), Expect = 1.4
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 203 NFKCTNIGIKDIIGYFKLINIKKTGDLWGLXXXXXXXXXXXXAPYLATIFNDCIDCGVFP 382
NFK + + ++ G + +KK L YL I+N+ + G FP
Sbjct: 480 NFK--PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFP 537
Query: 383 DLMKYSKIIPLFKSG-STFDHSNLRPISV 466
+ K++ I + K G S F ++ RPIS+
Sbjct: 538 NKWKHASISMIPKPGKSPFALNSYRPISL 566
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 31.5 bits (68), Expect = 1.4
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 203 NFKCTNIGIKDIIGYFKLINIKKTGDLWGLXXXXXXXXXXXXAPYLATIFNDCIDCGVFP 382
NFK + + ++ G + +KK L YL I+N+ + G FP
Sbjct: 480 NFK--PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFP 537
Query: 383 DLMKYSKIIPLFKSG-STFDHSNLRPISV 466
+ K++ I + K G S F ++ RPIS+
Sbjct: 538 NKWKHASISMIPKPGKSPFALNSYRPISL 566
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 31.5 bits (68), Expect = 1.4
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +2
Query: 203 NFKCTNIGIKDIIGYFKLINIKKTGDLWGLXXXXXXXXXXXXAPYLATIFNDCIDCGVFP 382
NFK + + ++ G + +KK L YL I+N+ + G FP
Sbjct: 480 NFK--PVTLAELNGLINSLELKKAPGTDNLNNKTIINLPTKARIYLILIYNNILRTGHFP 537
Query: 383 DLMKYSKIIPLFKSG-STFDHSNLRPISV 466
+ K++ I + K G S F ++ RPIS+
Sbjct: 538 NKWKHASISMIPKPGKSPFALNSYRPISL 566
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 31.1 bits (67), Expect = 1.9
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +3
Query: 555 QYGFTRGRSTIDAGVDLIKNISQAWEESHNALGVFCDLSKAFDCVEHNTLVRKLHHYGIR 734
Q F ST+DA + + S A ++ + D +AFD V + ++ +L +GI
Sbjct: 548 QVAFKSNHSTMDALLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVLCRLERWGIG 607
Query: 735 GVSLELIKSYLFQKNPKVDV 794
LIK+++ ++ +V +
Sbjct: 608 PRLYNLIKAFMTNRSFRVRI 627
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 335 YLATIFNDCIDCGVFPDLMKYSKIIPLFKSGSTFD-HSNLRPISV 466
Y+ +FN G FP K KII + K G S+ RPIS+
Sbjct: 472 YITKLFNAITKLGYFPQRWKMMKIIMIPKPGKNHTVASSYRPISL 516
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,565,171
Number of Sequences: 53049
Number of extensions: 637891
Number of successful extensions: 1279
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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