Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0338
(811 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containi... 32 0.52
At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to ... 29 3.7
At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containi... 29 3.7
At5g03440.2 68418.m00299 expressed protein 29 4.8
At5g03440.1 68418.m00298 expressed protein 29 4.8
At1g44414.1 68414.m05112 hypothetical protein 28 6.4
At5g24820.1 68418.m02932 aspartyl protease family protein low si... 28 8.4
At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containi... 28 8.4
At1g77360.1 68414.m09009 pentatricopeptide (PPR) repeat-containi... 28 8.4
At1g63230.1 68414.m07147 pentatricopeptide (PPR) repeat-containi... 28 8.4
>At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 367
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Frame = +2
Query: 347 IFNDCIDCGVFPDLMKYSKII-PLFKSGST------FDHSNLRPISVPTTYI 481
I+N+ + CG+ PDL+ Y+ +I L +SG+ FD R I P+ Y+
Sbjct: 270 IYNEMVQCGIEPDLLSYTAVIDSLGRSGNVKESLRLFDEMKQRQIR-PSVYV 320
>At5g53190.1 68418.m06612 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 263
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +2
Query: 119 YPSFYYKIFNFISD----AESLLQDHVDKCSVNFKCTNIGIKDIIGYFKLINIK 268
Y FY F+F++ A LL + S N T +GI +I YFK N K
Sbjct: 164 YMPFYLSFFSFLASSLWLAYGLLSHDLFLASPNMVATPLGILQLILYFKYKNKK 217
>At1g64580.1 68414.m07320 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 1052
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 347 IFNDCIDCGVFPDLMKYSKII 409
+FN +DCGV PD++ Y+ ++
Sbjct: 910 VFNRMVDCGVSPDIVTYNILL 930
>At5g03440.2 68418.m00299 expressed protein
Length = 98
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 NKETGNVRNSNAELTLKTNDRIITSHQEVASAFVR-YFADIPASTTKSLISSP 158
NKE GNV ++++ K+++ I +H E+A +R + P++ T + P
Sbjct: 4 NKEPGNVSSNSSNDKEKSSEEIFVNHAEIAWQEMRKKWVGDPSNRTSEMPDEP 56
>At5g03440.1 68418.m00298 expressed protein
Length = 98
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 3 NKETGNVRNSNAELTLKTNDRIITSHQEVASAFVR-YFADIPASTTKSLISSP 158
NKE GNV ++++ K+++ I +H E+A +R + P++ T + P
Sbjct: 4 NKEPGNVSSNSSNDKEKSSEEIFVNHAEIAWQEMRKKWVGDPSNRTSEMPDEP 56
>At1g44414.1 68414.m05112 hypothetical protein
Length = 101
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 359 CIDCGVFPDLMKYSKIIPLF 418
CI CG DL++Y K+I LF
Sbjct: 24 CIRCGSQADLVEYDKVIKLF 43
>At5g24820.1 68418.m02932 aspartyl protease family protein low
similarity to CND41, chloroplast nucleoid DNA binding
protein [Nicotiana tabacum] GI:2541876; contains Pfam
profile PF00026: Eukaryotic aspartyl protease
Length = 407
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 24 RNSNAELTLKTNDRIITSHQEVASAFVRYFADIPASTTKSLISSPTPNHYCK 179
++SN T+ N+ + H V++ + YF +TT S+ TP+ +C+
Sbjct: 85 KSSNTFSTISCNNSSLCPH--VSTNYTNYFNATTTNTTTSVSLLCTPSDFCR 134
>At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 819
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 344 TIFNDCIDCGVFPDLMKYSKIIPLFKSGSTFDHS 445
T++ +D GV PDL Y+ ++ G ++ S
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQS 543
>At1g77360.1 68414.m09009 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 481
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +2
Query: 332 PYLATIFNDCIDCGVFPDLMKYSKIIPLFKSGSTFDHS-----NLRP-ISVPTTYI 481
P +F + ID G PD++ YS ++ + D + ++ P I PTT+I
Sbjct: 218 PKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFI 273
>At1g63230.1 68414.m07147 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 323
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 347 IFNDCIDCGVFPDLMKYSKIIPLF-KSGSTFDHSNL 451
+F + D G+FPD++ YS +I F +SG D L
Sbjct: 98 LFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQL 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,013,627
Number of Sequences: 28952
Number of extensions: 311428
Number of successful extensions: 758
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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