Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0336
(746 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P08266 Cluster: DNA-directed RNA polymerase II subunit ... 474 e-132
UniRef50_P30876 Cluster: DNA-directed RNA polymerase II subunit ... 444 e-123
UniRef50_Q9MZ21 Cluster: DNA-directed RNA polymerase; n=5; Eutel... 440 e-122
UniRef50_A5DHT2 Cluster: DNA-directed RNA polymerase II subunit ... 356 3e-97
UniRef50_P08518 Cluster: DNA-directed RNA polymerase II subunit ... 355 7e-97
UniRef50_Q5KIB7 Cluster: DNA-directed RNA polymerase; n=72; Euka... 346 3e-94
UniRef50_Q4U9X1 Cluster: DNA-directed RNA polymerase; n=26; Euka... 329 5e-89
UniRef50_O96236 Cluster: DNA-directed RNA polymerase; n=10; Euka... 328 7e-89
UniRef50_Q98RY5 Cluster: DNA-directed RNA polymerase; n=1; Guill... 310 2e-83
UniRef50_UPI00004998DA Cluster: DNA-directed RNA polymerase subu... 306 4e-82
UniRef50_Q4Q6P8 Cluster: DNA-directed RNA polymerase II subunit ... 301 1e-80
UniRef50_Q23G41 Cluster: DNA-directed RNA polymerase, beta subun... 284 1e-75
UniRef50_A2E7H8 Cluster: DNA-directed RNA polymerase; n=1; Trich... 282 6e-75
UniRef50_Q3LW27 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 259 5e-68
UniRef50_Q7T6X7 Cluster: DNA-directed RNA polymerase subunit 2; ... 251 2e-65
UniRef50_A0RXX0 Cluster: DNA-directed RNA polymerase, beta subun... 250 2e-65
UniRef50_Q8SQY8 Cluster: DNA-directed RNA polymerase; n=1; Encep... 238 1e-61
UniRef50_P11513 Cluster: DNA-directed RNA polymerase subunit B; ... 238 1e-61
UniRef50_Q2I5U5 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 237 3e-61
UniRef50_Q4MYU5 Cluster: DNA-directed RNA polymerase; n=2; Theil... 236 5e-61
UniRef50_Q03587 Cluster: DNA-directed RNA polymerase subunit B; ... 235 6e-61
UniRef50_Q60181 Cluster: DNA-directed RNA polymerase subunit B';... 235 6e-61
UniRef50_Q5CPZ8 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 232 6e-60
UniRef50_Q9NW08 Cluster: DNA-directed RNA polymerase III subunit... 230 2e-59
UniRef50_Q54IZ9 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 227 3e-58
UniRef50_Q1L6W1 Cluster: DNA-directed RNA polymerase; n=2; Embry... 226 4e-58
UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8; Plasm... 225 9e-58
UniRef50_Q6E6F3 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 223 4e-57
UniRef50_A7AM79 Cluster: DNA-directed RNA polymerase, beta subun... 222 6e-57
UniRef50_A2E3T5 Cluster: DNA-directed RNA polymerase; n=1; Trich... 221 2e-56
UniRef50_Q0V2J9 Cluster: DNA-directed RNA polymerase; n=1; Phaeo... 221 2e-56
UniRef50_Q4QD43 Cluster: DNA-directed RNA polymerase polypeptide... 219 6e-56
UniRef50_Q4A245 Cluster: Putative DNA-directed RNA polymerase II... 219 8e-56
UniRef50_UPI000065EBB2 Cluster: DNA-directed RNA polymerase III ... 215 7e-55
UniRef50_Q236N3 Cluster: DNA-directed RNA polymerase, beta subun... 214 2e-54
UniRef50_Q7R5G4 Cluster: DNA-directed RNA polymerase; n=1; Giard... 213 3e-54
UniRef50_Q7QSN9 Cluster: DNA-directed RNA polymerase; n=2; Giard... 211 2e-53
UniRef50_Q1L6V7 Cluster: DNA-directed RNA polymerase; n=1; Sphag... 210 2e-53
UniRef50_Q197F1 Cluster: Putative uncharacterized protein; n=1; ... 209 5e-53
UniRef50_UPI00004993B0 Cluster: DNA-directed RNA polymerase subu... 209 6e-53
UniRef50_A2SSM5 Cluster: DNA-directed RNA polymerase; n=1; Metha... 206 3e-52
UniRef50_UPI0000E487B4 Cluster: PREDICTED: similar to Polymerase... 203 3e-51
UniRef50_Q4ZJA8 Cluster: DNA-directed RNA polymerase; n=3; Lymph... 203 4e-51
UniRef50_Q1L6W4 Cluster: DNA-directed RNA polymerase; n=1; Isoet... 203 4e-51
UniRef50_Q259Y6 Cluster: DNA-directed RNA polymerase; n=8; Euphy... 200 2e-50
UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2; Eukar... 196 5e-49
UniRef50_A3AIW9 Cluster: DNA-directed RNA polymerase; n=2; Oryza... 195 8e-49
UniRef50_Q5YF54 Cluster: DNA-directed RNA polymerase; n=3; Infec... 194 1e-48
UniRef50_Q98S96 Cluster: DNA-directed RNA polymerase; n=1; Guill... 194 1e-48
UniRef50_Q2I5U8 Cluster: DNA-directed RNA polymerase; n=12; Fung... 194 1e-48
UniRef50_Q91F97 Cluster: 428L; n=1; Invertebrate iridescent viru... 194 2e-48
UniRef50_P28365 Cluster: DNA-directed RNA polymerase I subunit R... 180 3e-47
UniRef50_P20028 Cluster: DNA-directed RNA polymerase I subunit R... 187 2e-46
UniRef50_A3C638 Cluster: DNA-directed RNA polymerase; n=4; Oryza... 187 3e-46
UniRef50_Q7QXS5 Cluster: DNA-directed RNA polymerase; n=1; Giard... 187 3e-46
UniRef50_Q9LK40 Cluster: DNA-directed RNA polymerase; n=29; Sper... 185 9e-46
UniRef50_A2EN74 Cluster: DNA-directed RNA polymerase; n=1; Trich... 185 9e-46
UniRef50_Q9H9Y6 Cluster: DNA-directed RNA polymerase I subunit R... 184 2e-45
UniRef50_A0BY74 Cluster: DNA-directed RNA polymerase; n=2; Param... 184 3e-45
UniRef50_Q7Q416 Cluster: DNA-directed RNA polymerase; n=1; Anoph... 183 5e-45
UniRef50_Q5RM00 Cluster: DNA-directed RNA polymerase; n=40; Fung... 182 8e-45
UniRef50_Q1L6V8 Cluster: DNA-directed RNA polymerase; n=1; Selag... 182 1e-44
UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79; Magn... 181 2e-44
UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3; Arabi... 181 2e-44
UniRef50_A6RAC1 Cluster: DNA-directed RNA polymerase; n=6; Ascom... 181 2e-44
UniRef50_Q8SSB7 Cluster: DNA-directed RNA polymerase; n=1; Encep... 177 2e-43
UniRef50_Q4N2L4 Cluster: DNA-directed RNA polymerase, beta subun... 175 7e-43
UniRef50_Q27493 Cluster: DNA-directed RNA polymerase; n=3; Chrom... 175 7e-43
UniRef50_P22138 Cluster: DNA-directed RNA polymerase I subunit R... 175 1e-42
UniRef50_A4RSZ5 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 171 1e-41
UniRef50_Q6C6G0 Cluster: DNA-directed RNA polymerase; n=1; Yarro... 170 3e-41
UniRef50_Q5CNH7 Cluster: DNA-directed RNA polymerase; n=2; Crypt... 169 5e-41
UniRef50_O74633 Cluster: DNA-directed RNA polymerase I subunit R... 166 6e-40
UniRef50_P42487 Cluster: DNA-directed RNA polymerase subunit 2; ... 157 2e-37
UniRef50_Q06VE3 Cluster: RNA polymerase subunit; n=3; Ascovirus|... 152 8e-36
UniRef50_Q5US39 Cluster: DNA-directed RNA polymerase; n=12; Dika... 151 1e-35
UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1; Guill... 149 9e-35
UniRef50_Q4QA33 Cluster: DNA-directed RNA polymerase; n=6; Trypa... 145 1e-33
UniRef50_Q3LW79 Cluster: Second-largest subunit of RNA polymeras... 144 2e-33
UniRef50_A7AT93 Cluster: DNA-directed RNA polymerase, beta subun... 132 1e-29
UniRef50_Q6YQW3 Cluster: DNA-directed RNA polymerase subunit bet... 128 2e-28
UniRef50_Q5FM97 Cluster: DNA-directed RNA polymerase subunit bet... 128 2e-28
UniRef50_Q6F0L7 Cluster: DNA-directed RNA polymerase subunit bet... 126 4e-28
UniRef50_A6DPM7 Cluster: DNA-directed RNA polymerase subunit bet... 124 2e-27
UniRef50_Q9Z9M2 Cluster: DNA-directed RNA polymerase subunit bet... 123 4e-27
UniRef50_Q67JT3 Cluster: DNA-directed RNA polymerase subunit bet... 122 7e-27
UniRef50_Q97EG9 Cluster: DNA-directed RNA polymerase subunit bet... 122 7e-27
UniRef50_Q8KG15 Cluster: DNA-directed RNA polymerase subunit bet... 122 9e-27
UniRef50_Q8V4V3 Cluster: DNA-directed RNA polymerase 132 kDa pol... 122 9e-27
UniRef50_Q3LVX3 Cluster: Second-largest subunit of DNA-directed ... 120 3e-26
UniRef50_Q64NJ7 Cluster: DNA-directed RNA polymerase subunit bet... 120 4e-26
UniRef50_Q2S1Q5 Cluster: DNA-directed RNA polymerase subunit bet... 120 5e-26
UniRef50_Q98Q23 Cluster: DNA-directed RNA polymerase subunit bet... 120 5e-26
UniRef50_A5USR7 Cluster: DNA-directed RNA polymerase; n=5; Chlor... 118 1e-25
UniRef50_Q7URW6 Cluster: DNA-directed RNA polymerase subunit bet... 117 3e-25
UniRef50_Q7RER1 Cluster: DNA-directed RNA polymerase; n=6; Plasm... 116 6e-25
UniRef50_Q8F0S2 Cluster: DNA-directed RNA polymerase subunit bet... 114 2e-24
UniRef50_O78485 Cluster: DNA-directed RNA polymerase subunit bet... 113 3e-24
UniRef50_Q9Z9A0 Cluster: DNA-directed RNA polymerase subunit bet... 113 3e-24
UniRef50_A5K506 Cluster: DNA-directed RNA polymerase; n=5; cellu... 112 1e-23
UniRef50_A6PR78 Cluster: DNA-directed RNA polymerase, beta subun... 111 2e-23
UniRef50_Q85FR7 Cluster: DNA-directed RNA polymerase subunit bet... 109 7e-23
UniRef50_A0T0D7 Cluster: DNA-directed RNA polymerase subunit bet... 107 3e-22
UniRef50_Q2JJ19 Cluster: DNA-directed RNA polymerase subunit bet... 106 5e-22
UniRef50_Q20EX1 Cluster: DNA-directed RNA polymerase subunit bet... 105 9e-22
UniRef50_Q3ZJ93 Cluster: DNA-directed RNA polymerase subunit bet... 105 1e-21
UniRef50_Q0P3M6 Cluster: DNA-directed RNA polymerase subunit bet... 103 4e-21
UniRef50_Q8HTL7 Cluster: DNA-directed RNA polymerase subunit bet... 103 5e-21
UniRef50_P56299 Cluster: DNA-directed RNA polymerase subunit bet... 103 6e-21
UniRef50_Q9TL06 Cluster: DNA-directed RNA polymerase subunit bet... 101 1e-20
UniRef50_A4M8H6 Cluster: DNA-directed RNA polymerase, beta subun... 101 2e-20
UniRef50_A6YGE0 Cluster: DNA-directed RNA polymerase; n=1; Lepto... 99 1e-19
UniRef50_Q7YN57 Cluster: DNA-directed RNA polymerase subunit bet... 98 2e-19
UniRef50_Q11HB3 Cluster: DNA-directed RNA polymerase subunit bet... 96 9e-19
UniRef50_P29398 Cluster: DNA-directed RNA polymerase subunit bet... 94 3e-18
UniRef50_A2T324 Cluster: DNA-directed RNA polymerase subunit bet... 94 4e-18
UniRef50_A2YRP1 Cluster: DNA-directed RNA polymerase; n=39; Magn... 93 5e-18
UniRef50_Q9MTD3 Cluster: DNA-directed RNA polymerase subunit bet... 93 7e-18
UniRef50_O67762 Cluster: DNA-directed RNA polymerase subunit bet... 92 1e-17
UniRef50_Q5FTX7 Cluster: DNA-directed RNA polymerase subunit bet... 91 2e-17
UniRef50_P23579 Cluster: DNA-directed RNA polymerase subunit bet... 91 2e-17
UniRef50_A7BQQ8 Cluster: DNA-directed RNA polymerase, beta subun... 91 3e-17
UniRef50_Q0SFB3 Cluster: DNA-directed RNA polymerase subunit bet... 91 3e-17
UniRef50_A1E9I1 Cluster: DNA-directed RNA polymerase subunit bet... 91 3e-17
UniRef50_Q9PQV6 Cluster: DNA-directed RNA polymerase subunit bet... 91 4e-17
UniRef50_A1ALT4 Cluster: DNA-directed RNA polymerase subunit bet... 90 5e-17
UniRef50_Q8G514 Cluster: DNA-directed RNA polymerase subunit bet... 90 5e-17
UniRef50_A6BM50 Cluster: DNA-directed RNA polymerase subunit bet... 90 6e-17
UniRef50_UPI00015BD08F Cluster: UPI00015BD08F related cluster; n... 89 1e-16
UniRef50_Q06J17 Cluster: DNA-directed RNA polymerase subunit bet... 89 1e-16
UniRef50_Q1IHH4 Cluster: DNA-directed RNA polymerase subunit bet... 89 1e-16
UniRef50_Q9F4A7 Cluster: DNA-directed RNA polymerase; n=10; Bact... 88 2e-16
UniRef50_Q4FQH3 Cluster: DNA-directed RNA polymerase subunit bet... 87 6e-16
UniRef50_Q9RVV9 Cluster: DNA-directed RNA polymerase subunit bet... 87 6e-16
UniRef50_P78013 Cluster: DNA-directed RNA polymerase subunit bet... 86 8e-16
UniRef50_P50546 Cluster: DNA-directed RNA polymerase subunit bet... 86 8e-16
UniRef50_Q8KTP8 Cluster: DNA-directed RNA polymerase; n=1; Candi... 86 1e-15
UniRef50_Q7VJ82 Cluster: Bifunctional DNA-directed RNA polymeras... 85 1e-15
UniRef50_Q9AIU3 Cluster: DNA-directed RNA polymerase subunit bet... 83 7e-15
UniRef50_A3FMP8 Cluster: DNA-directed RNA polymerase; n=5; Veill... 83 9e-15
UniRef50_Q8EWX1 Cluster: DNA-directed RNA polymerase subunit bet... 82 1e-14
UniRef50_O21237 Cluster: RNA polymerase subunit beta; n=1; Recli... 81 3e-14
UniRef50_A6NYC9 Cluster: DNA-directed RNA polymerase; n=1; Bacte... 59 7e-14
UniRef50_Q05FH8 Cluster: DNA-directed RNA polymerase subunit bet... 79 9e-14
UniRef50_Q3ZX01 Cluster: DNA-directed RNA polymerase subunit bet... 79 1e-13
UniRef50_Q6MJ09 Cluster: DNA-directed RNA polymerase subunit bet... 79 1e-13
UniRef50_Q23U98 Cluster: DNA-directed RNA polymerase, beta subun... 78 2e-13
UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit bet... 74 3e-12
UniRef50_Q2EEX2 Cluster: DNA-directed RNA polymerase subunit bet... 71 2e-11
UniRef50_P05472 Cluster: Probable DNA-directed RNA polymerase; n... 70 5e-11
UniRef50_A7SSE2 Cluster: Predicted protein; n=1; Nematostella ve... 69 1e-10
UniRef50_Q9EMY3 Cluster: AMV066; n=2; Entomopoxvirinae|Rep: AMV0... 68 3e-10
UniRef50_Q06SF4 Cluster: DNA-directed RNA polymerase; n=1; Stige... 62 1e-08
UniRef50_A7MA28 Cluster: RNA Polymerase II; n=11; Caryophyllacea... 57 4e-07
UniRef50_Q4MY95 Cluster: DNA-directed RNA polymerase subunit bet... 48 2e-04
UniRef50_A7AXE5 Cluster: RpoB; n=1; Babesia bovis|Rep: RpoB - Ba... 40 0.065
UniRef50_A5AMN9 Cluster: DNA-directed RNA polymerase; n=1; Vitis... 38 0.20
UniRef50_Q6ZZ55 Cluster: RNA polymerase II; n=3; Caryophyllaceae... 36 0.80
UniRef50_Q23JY4 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_Q1NYW3 Cluster: DNA-directed RNA polymerase; n=1; Candi... 33 5.6
UniRef50_Q7S2N8 Cluster: Predicted protein; n=1; Neurospora cras... 33 5.6
UniRef50_Q5WRA3 Cluster: Multidrug resistance associated protein... 33 9.9
>UniRef50_P08266 Cluster: DNA-directed RNA polymerase II subunit RPB2;
n=12; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB2 - Drosophila melanogaster (Fruit fly)
Length = 1176
Score = 474 bits (1168), Expect = e-132
Identities = 215/228 (94%), Positives = 224/228 (98%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GIQYRQEDM FTCEG+ PDIIINPHAIPSRMTIGHLIEC+QGK+ SNKGEIGDATPFNDA
Sbjct: 948 GIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDA 1007
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
VNVQKIS+ LQ+YGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG
Sbjct: 1008 VNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 1067
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
PVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERLFEVSDPYR+H+CNFCGLI
Sbjct: 1068 PVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLI 1127
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
AIANLRNNTFECKGCKNKTQISQ+RLPYAAKLLFQELMSMNIAPRLMV
Sbjct: 1128 AIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175
>UniRef50_P30876 Cluster: DNA-directed RNA polymerase II subunit RPB2;
n=745; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB2 - Homo sapiens (Human)
Length = 1174
Score = 444 bits (1093), Expect = e-123
Identities = 197/229 (86%), Positives = 218/229 (95%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIEC+QGKVS+NKGEIGDATPFNDA
Sbjct: 946 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDA 1005
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
VNVQKIS+LL DYGYHLRGNEV+YNG TGRKI +Q+F+GPTYYQRLKHMVDDKIHSRARG
Sbjct: 1006 VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARG 1065
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+QIL RQPMEGR+RDGGLRFGEMERDCQIAHGAAQFLRERLFE SDPY++HVCN CG++
Sbjct: 1066 PIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIM 1125
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
AIAN R +T+EC+GC+NKTQIS +R+PYA KLLFQELMSM+IAPR+M V
Sbjct: 1126 AIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV 1174
>UniRef50_Q9MZ21 Cluster: DNA-directed RNA polymerase; n=5;
Euteleostomi|Rep: DNA-directed RNA polymerase - Sus
scrofa (Pig)
Length = 381
Score = 440 bits (1085), Expect = e-122
Identities = 196/229 (85%), Positives = 216/229 (94%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIEC+QGKVS+NKGEIGDATPFNDA
Sbjct: 153 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDA 212
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
VNVQKIS+LL DYGYHLRGNEV+YNG TGRKI +Q+F+GPTYYQRLKHMVDDKIHSR RG
Sbjct: 213 VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRTRG 272
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+QIL RQPMEGR+RDGGLRFGEMERDCQIAHGAAQFLRERLFE SDPY+ HVCN CG++
Sbjct: 273 PIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQAHVCNLCGIM 332
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
AIAN R +T+EC+GC+NKTQIS +R+PYA KLLFQELMSM+IAPR+M V
Sbjct: 333 AIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV 381
>UniRef50_A5DHT2 Cluster: DNA-directed RNA polymerase II subunit RPB2;
n=652; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB2 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1236
Score = 356 bits (876), Expect = 3e-97
Identities = 161/227 (70%), Positives = 190/227 (83%), Gaps = 1/227 (0%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ YR EDMPFT +GI PD+IINPHAIPSRMT+ HLIEC+ KVSS G GDA+PF D
Sbjct: 1000 GVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSKVSSLSGLEGDASPFTD- 1058
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V + +S LL+++GY RG EVMY+GHTG+K+ AQVF GPTYYQRL+HMVDDKIH+RARG
Sbjct: 1059 VTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARG 1118
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
PVQ+L RQP+EGR+RDGGLRFGEMERDC IAHGAA FL+ERL E SD +R+HVC CGL+
Sbjct: 1119 PVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCGLM 1178
Query: 543 A-IANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
+ IANL+ N FEC+ CKNKT I QI +PYAAKLLFQELM+MNI+PRL
Sbjct: 1179 SVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1225
>UniRef50_P08518 Cluster: DNA-directed RNA polymerase II subunit RPB2;
n=1329; Fungi|Rep: DNA-directed RNA polymerase II subunit
RPB2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1224
Score = 355 bits (873), Expect = 7e-97
Identities = 159/227 (70%), Positives = 188/227 (82%), Gaps = 1/227 (0%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GI YR+EDMPFT EGI PD+IINPHAIPSRMT+ HLIEC+ KV++ G GDA+PF D
Sbjct: 991 GITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTD- 1049
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ V+ IS LL+++GY RG EVMYNGHTG+K+ AQ+F GPTYYQRL+HMVDDKIH+RARG
Sbjct: 1050 ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARG 1109
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+Q+L RQP+EGR+RDGGLRFGEMERDC IAHGAA FL+ERL E SD +R+H+C CGL+
Sbjct: 1110 PMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLM 1169
Query: 543 -AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
IA L +N FECKGC NK I QI +PYAAKLLFQELM+MNI PRL
Sbjct: 1170 TVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRL 1216
>UniRef50_Q5KIB7 Cluster: DNA-directed RNA polymerase; n=72;
Eukaryota|Rep: DNA-directed RNA polymerase - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 1193
Score = 346 bits (851), Expect = 3e-94
Identities = 155/226 (68%), Positives = 188/226 (83%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GI YRQEDMPFT EG+ PDIIINPHAIPSRMTIGHL+EC+ KVS+ G GDATPF +
Sbjct: 964 GITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVECLLSKVSTLTGAEGDATPFTE- 1022
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ V+ +S +L+ GY RG EV+Y+GHTGRK+ AQV+ GPTYYQRLKHMVDDKIH+RARG
Sbjct: 1023 LTVEAVSKVLRAKGYQSRGFEVLYHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARG 1082
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+QIL RQP+EGR+RDGGLRFGEMERDC I+HG A FL+ER+++ SD +RIHVC+ CGL+
Sbjct: 1083 PLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLM 1142
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
A+ANL+ F C C+N TQISQ+ +PYAAKLLFQEL +MNIA R+
Sbjct: 1143 AVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQAMNIACRM 1188
>UniRef50_Q4U9X1 Cluster: DNA-directed RNA polymerase; n=26;
Eukaryota|Rep: DNA-directed RNA polymerase - Theileria
annulata
Length = 1223
Score = 329 bits (808), Expect = 5e-89
Identities = 145/228 (63%), Positives = 186/228 (81%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ +R ED+PFTC+GI PDII+NPHA+PSRMTIGHLIEC+ GKV S G GDATPF+
Sbjct: 994 GMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECLLGKVGSLVGMEGDATPFSK- 1052
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ +++IS+ L Y GNE +NG TG + +++F+GPTYYQRLKHMV+DKIH+RARG
Sbjct: 1053 MTLEQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARG 1112
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
PV +L RQP EGR+R+GGLRFGEMERDC I+HGAA+ L+ERLF+ SD YR+HVCNFCGL+
Sbjct: 1113 PVTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLL 1172
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
++ANL N++F+C C NKTQISQ+ +PYA KLL QELM+M I P+L++
Sbjct: 1173 SVANLNNSSFQCTACDNKTQISQVTIPYACKLLLQELMAMAIYPKLIL 1220
>UniRef50_O96236 Cluster: DNA-directed RNA polymerase; n=10;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum (isolate 3D7)
Length = 1364
Score = 328 bits (807), Expect = 7e-89
Identities = 145/228 (63%), Positives = 185/228 (81%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GI YR EDMPF+ GI PDII+NPHA+PSRMTIGHL+EC+ GKV++ +G GDATPF+
Sbjct: 1111 GITYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVECLTGKVAAIEGGEGDATPFSK- 1169
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ VQ+IS L + GY GNE++YNGH GR + +++F+GPTYYQRLKHMV+DKIH+R+RG
Sbjct: 1170 ITVQEISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARSRG 1229
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+ ++ RQP EGR+RDGGLRFGEMERDC I+HG+A+ L+ERLFE SD YR+HVC+ CGL
Sbjct: 1230 PLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERLFEESDAYRVHVCDNCGLC 1289
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
IA++ N +EC C +KT ISQI LPYA KLLFQELM+M I P+L++
Sbjct: 1290 CIADINKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAIYPKLVL 1337
>UniRef50_Q98RY5 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1206
Score = 310 bits (761), Expect = 2e-83
Identities = 136/227 (59%), Positives = 181/227 (79%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ YRQ +MPF+ +GI+PDII+NPHAIPSRMTIGHL+EC+ K S KG GD TPF +
Sbjct: 977 GMIYRQVNMPFSEQGISPDIIMNPHAIPSRMTIGHLLECLLSKAVSMKGIEGDGTPF-ER 1035
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
N++ I + L+ + G E++YNG G++I + +F+GPTYYQ+LKHMV+DKIHSRARG
Sbjct: 1036 QNMEDIMNFLEKNNFDKNGWEILYNGFNGKRIKSLIFMGPTYYQKLKHMVEDKIHSRARG 1095
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+QIL RQP+EGR+R+GGLRFGEMERDC I+HGAA FL++RLF+ SDP+ I+VC+FCG I
Sbjct: 1096 PIQILTRQPVEGRSREGGLRFGEMERDCMISHGAAIFLKDRLFDQSDPFGIYVCDFCGFI 1155
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLM 683
++N + N FEC+ C N++ IS IR+PYA KLL QELMS+++ RL+
Sbjct: 1156 VVSNKKQNNFECRNCSNRSMISFIRIPYAFKLLIQELMSLSVGVRLI 1202
>UniRef50_UPI00004998DA Cluster: DNA-directed RNA polymerase subunit;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: DNA-directed
RNA polymerase subunit - Entamoeba histolytica HM-1:IMSS
Length = 1170
Score = 306 bits (751), Expect = 4e-82
Identities = 134/226 (59%), Positives = 172/226 (76%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ YRQEDMPFT EGI+PDII+NPHAIPSRMT+G L+EC+ GKV + G++ TPF
Sbjct: 941 GMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGKVGALVGDVQSGTPFQKD 1000
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V V +I L Y RG E +++GHTGRK+++ V++GPTYYQRLKH+VDDK+H RA G
Sbjct: 1001 VTVDRIGERLHKLKYQRRGYEALFSGHTGRKLDSLVYIGPTYYQRLKHLVDDKVHGRATG 1060
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P L RQP+EGR+RDGGLR GEMERDC I+HG + L+ERLF SD Y+I+VC+ C +
Sbjct: 1061 PYATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKERLFLASDKYQIYVCDKCHMP 1120
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
A+AN + TF+C CK+KT IS++ +PYA KLLFQELMSM + PR+
Sbjct: 1121 AVANHKACTFQCSCCKDKTHISKVDIPYACKLLFQELMSMAVCPRI 1166
>UniRef50_Q4Q6P8 Cluster: DNA-directed RNA polymerase II subunit 2,
putative; n=5; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit 2, putative - Leishmania major
Length = 1185
Score = 301 bits (739), Expect = 1e-80
Identities = 139/226 (61%), Positives = 169/226 (74%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GIQ+RQEDMPF +GI PD+IINPHAIPSRMT+ HLIE + GKV+ KG ATPF
Sbjct: 956 GIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEVYATPFCSV 1015
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V V L GNE +YNGHTG ++ +F GPT+YQRLKH+ DKIH+R RG
Sbjct: 1016 V-VDDFGKALHALRSQRYGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRG 1074
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+Q LVRQP EGRA +GGLRFGEMERDC +++GA+Q+LRERLF VSD Y +HVCN CG I
Sbjct: 1075 PLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTI 1134
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
+A+ + N ++CKGC+N T+ISQ+ +PYA KLLFQELMSM I PRL
Sbjct: 1135 CVADTKLNRYQCKGCENDTRISQVLMPYACKLLFQELMSMTILPRL 1180
>UniRef50_Q23G41 Cluster: DNA-directed RNA polymerase, beta subunit
family protein; n=4; Oligohymenophorea|Rep: DNA-directed
RNA polymerase, beta subunit family protein - Tetrahymena
thermophila SB210
Length = 1226
Score = 284 bits (697), Expect = 1e-75
Identities = 131/232 (56%), Positives = 173/232 (74%), Gaps = 4/232 (1%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ R ED+P+ EGI +++INPH IPSRMTIGH+IE + K+SS KG GDATPF+
Sbjct: 988 GMTIRGEDLPYNIEGIIAELVINPHCIPSRMTIGHMIEGLNSKLSSLKGIWGDATPFS-G 1046
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ +Q I+S L YGY GNEV+YN +TG +++ Q++ GPT+YQRL+H+VDDK++SR+RG
Sbjct: 1047 IKLQDIASELHTYGYQRYGNEVLYNPYTGMRLSTQIYYGPTFYQRLRHLVDDKMYSRSRG 1106
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
PV +VRQP GR+R GGLRFGEMERDC IAHG + FL+ER F VSD +R HVC+ CGL
Sbjct: 1107 PVVAIVRQPTHGRSRGGGLRFGEMERDCIIAHGTSNFLKERTFGVSDQFRTHVCSRCGLF 1166
Query: 543 AIANLRNNTFECKGC----KNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
A A++ N+ ++C GC K +I Q+ LPYAAK L QELM+M+I PR+ V
Sbjct: 1167 AKADVTNHKYDCTGCSQGDKKHYKIVQVYLPYAAKQLIQELMAMHIVPRIKV 1218
>UniRef50_A2E7H8 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA polymerase
- Trichomonas vaginalis G3
Length = 1177
Score = 282 bits (692), Expect = 6e-75
Identities = 130/232 (56%), Positives = 172/232 (74%), Gaps = 3/232 (1%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGK---VSSNKGEIGDATPF 173
G+ YRQEDMPFT +G+ PDII+NPHA+PSRMTIGHLIEC+ GK + + GDATPF
Sbjct: 946 GMTYRQEDMPFTRDGMVPDIIMNPHALPSRMTIGHLIECLLGKCTAIDPQNADEGDATPF 1005
Query: 174 NDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 353
V V I+ LQD G+ GNE +YNG +G+++ A+++ GPTYYQRLKHMV DK H+R
Sbjct: 1006 C-GVTVDAIAKRLQDAGFEKYGNETLYNGRSGKRLKAKIYFGPTYYQRLKHMVGDKAHAR 1064
Query: 354 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFC 533
A G +++RQP++GRAR+GGLRFGEMERDC IAHG + +R+RL E SD Y + VC C
Sbjct: 1065 ALGRKSLILRQPVDGRARNGGLRFGEMERDCLIAHGVSAMMRDRLLENSDRYFVPVCKTC 1124
Query: 534 GLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
GLIAI + T EC C+++ +++++ +PYA KL+ QELMSM IAPRL ++
Sbjct: 1125 GLIAIEK-TDGTMECPACQDEGRLAKVEMPYAFKLVIQELMSMCIAPRLNLI 1175
>UniRef50_Q3LW27 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1159
Score = 259 bits (635), Expect = 5e-68
Identities = 124/228 (54%), Positives = 162/228 (71%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G YRQ +P T +TPD+I+NPHAIPSRMTIGH+IE + KVSS+ G++GDAT F++
Sbjct: 933 GYSYRQSLLPTTATSVTPDLIMNPHAIPSRMTIGHMIEMLMSKVSSHSGKLGDATAFSEG 992
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
N+ KI L +G H G E M +G G + + +GP YYQRLKHMV DK SR+RG
Sbjct: 993 -NIGKIIGHLSKFGIHHFGLEKMISGFNGDILQKSILVGPIYYQRLKHMVVDKFFSRSRG 1051
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P +IL RQP+EG+ R+GGLRFGEMERDC ++HG++ FL+ERL + SD +R+H+C GL
Sbjct: 1052 PYEILTRQPVEGKTREGGLRFGEMERDCVLSHGSSLFLKERLMDESDKFRVHICEKSGLF 1111
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
ANL+ TF +K+ I QI +PYA KLLFQEL++M IAPRL+V
Sbjct: 1112 CPANLKTQTFWSTIYHSKS-ICQIFIPYACKLLFQELIAMCIAPRLVV 1158
>UniRef50_Q7T6X7 Cluster: DNA-directed RNA polymerase subunit 2; n=1;
Acanthamoeba polyphaga mimivirus|Rep: DNA-directed RNA
polymerase subunit 2 - Mimivirus
Length = 1196
Score = 251 bits (614), Expect = 2e-65
Identities = 123/227 (54%), Positives = 154/227 (67%), Gaps = 1/227 (0%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G + + DM F+ G+ PDIIINP+ +P RMTIG LIEC+ GK+ + KG GDATPF +
Sbjct: 960 GYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIECLLGKLCAVKGVYGDATPFT-S 1018
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V++ I+ L GY GNE MYNG G+K+ ++F+GPTYYQRLK MV DK HSRARG
Sbjct: 1019 VDLNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIGPTYYQRLKQMVGDKAHSRARG 1078
Query: 363 PVQILVRQPMEGRARDGGLRFG-EMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 539
P Q+L RQ EGR+RDGGLR G EMERD AHG AQFL+E+ + SD Y HVC+ CG
Sbjct: 1079 PTQLLTRQAPEGRSRDGGLRIGFEMERDALCAHGVAQFLKEKTVDNSDIYTCHVCDSCGQ 1138
Query: 540 IAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
A + C GC+N T IS+I +PYA KLL QEL S+NI ++
Sbjct: 1139 FAHKVPEKKYYTCTGCRNTTSISKIVIPYAFKLLLQELASINILGKI 1185
>UniRef50_A0RXX0 Cluster: DNA-directed RNA polymerase, beta
subunit/140 kD subunit; n=2; Thermoprotei|Rep:
DNA-directed RNA polymerase, beta subunit/140 kD subunit
- Cenarchaeum symbiosum
Length = 1115
Score = 250 bits (613), Expect = 2e-65
Identities = 110/228 (48%), Positives = 160/228 (70%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GI + ED+P+T EG+TPD++INPHA PSRMT+G +E I GK ++ +G D + F
Sbjct: 885 GILAKNEDLPYTAEGVTPDVLINPHAFPSRMTVGMFMESITGKAAALRGTQFDGSAFVGE 944
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
++++ ++ G+ G E+MY+G TG+ +VF+G YYQ+L HMV DKIH+RARG
Sbjct: 945 -KMEEVREVMDTAGFKYSGKEIMYDGRTGKAFPVEVFIGVVYYQKLHHMVADKIHARARG 1003
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
VQ+L +QP EGRAR GGLRFGEMERDC IA+GA+ L++RL + SD I+VC CGL+
Sbjct: 1004 QVQMLTKQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIYVCERCGLV 1063
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
A +++ + C+ C +K ++S + + YA KLL QE+ S+N+APRL++
Sbjct: 1064 AYHDVKQRKYVCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRLLI 1111
>UniRef50_Q8SQY8 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1110
Score = 238 bits (582), Expect = 1e-61
Identities = 115/228 (50%), Positives = 151/228 (66%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ RQEDMPF +GI PDII+NPH PSRMT+G ++E I GK +G+I D+T F +
Sbjct: 890 GLLVRQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKIVELISGKAGVLEGQILDSTAFKEN 949
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+V++ LL +G+ G + +G TG + A +F GP +YQRLKHMV DKIH RARG
Sbjct: 950 -SVEQTCELLIKHGFSYSGKDCFTSGTTGAPLAAYIFFGPVFYQRLKHMVADKIHMRARG 1008
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P IL RQP EGR++DGGL+ GEMERDC I +GA+ + ERL SD + +VC CG++
Sbjct: 1009 PRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLITERLMTSSDVFEAYVCRSCGVL 1068
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
A C CK T+ ++++PYA KLLFQELMSMNI PRL +
Sbjct: 1069 AFKGC------CVACKG-TKPVKVKMPYACKLLFQELMSMNILPRLHI 1109
>UniRef50_P11513 Cluster: DNA-directed RNA polymerase subunit B; n=68;
Archaea|Rep: DNA-directed RNA polymerase subunit B -
Sulfolobus acidocaldarius
Length = 1126
Score = 238 bits (582), Expect = 1e-61
Identities = 111/228 (48%), Positives = 156/228 (68%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GI Q DMP+T +GI PDII+NPHA+PSRMTIG ++E I GK ++ G+ DATPF +
Sbjct: 887 GILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSGKPVDATPFLET 946
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+Q++ + G+ EV+Y+G TG+K+ +++ G YYQ+L HMV DK+H+RARG
Sbjct: 947 PKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHARARG 1006
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
PVQIL RQP EGRAR+GGLRFGEMERDC I G A +++RL + SD +++C+ CG +
Sbjct: 1007 PVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSDKAVVYICDQCGYV 1066
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
+ N + C +K+ + + + YA KLL QELMSM I+PRL++
Sbjct: 1067 GWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMSMVISPRLIL 1114
>UniRef50_Q2I5U5 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Batrachochytrium dendrobatidis
Length = 1202
Score = 237 bits (579), Expect = 3e-61
Identities = 108/141 (76%), Positives = 121/141 (85%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GI YR EDMPFT +GITPD+IINPHAIPSRMTIGHL+EC+ KVS+ G+ GDATPF D
Sbjct: 1063 GITYRTEDMPFTADGITPDLIINPHAIPSRMTIGHLVECLLSKVSTFTGDEGDATPFTD- 1121
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V V+ IS LQ YGY RG EV+YNGHTGRK+NAQV+ GPTYYQRLKHMVDDKIHSRARG
Sbjct: 1122 VTVEAISQALQGYGYQRRGFEVLYNGHTGRKLNAQVYTGPTYYQRLKHMVDDKIHSRARG 1181
Query: 363 PVQILVRQPMEGRARDGGLRF 425
P+QIL RQP+EGR+RDGGLRF
Sbjct: 1182 PLQILTRQPVEGRSRDGGLRF 1202
>UniRef50_Q4MYU5 Cluster: DNA-directed RNA polymerase; n=2;
Theileria|Rep: DNA-directed RNA polymerase - Theileria
parva
Length = 1244
Score = 236 bits (577), Expect = 5e-61
Identities = 121/242 (50%), Positives = 154/242 (63%), Gaps = 14/242 (5%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF--- 173
G+ EDMPFT GI PD+I+NPH PSRMT+G L+E + K S G D+TPF
Sbjct: 1007 GLIAEHEDMPFTESGIVPDLIMNPHGFPSRMTVGKLLELVASKSSVFSGNFVDSTPFSNS 1066
Query: 174 ------NDAVN-----VQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRL 320
ND N + I +L G+H +G E++Y+G +G IN +F+GP YYQRL
Sbjct: 1067 YSDNLCNDLNNSGSNKMSDICDILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRL 1126
Query: 321 KHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVS 500
KHMV DKIH+R RGP Q + RQP EGR+RDGGLR GEMERDC IA+G++ L ERL S
Sbjct: 1127 KHMVTDKIHARGRGPRQPITRQPTEGRSRDGGLRLGEMERDCLIAYGSSNLLVERLMLSS 1186
Query: 501 DPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
D + I VC+ CG + N CK C+N + ++Q+ LPYA KLLFQEL +MNI P L
Sbjct: 1187 DVFNIEVCSSCGFMGYNNF------CKFCQNNS-LAQVSLPYACKLLFQELQAMNIRPSL 1239
Query: 681 MV 686
+V
Sbjct: 1240 IV 1241
>UniRef50_Q03587 Cluster: DNA-directed RNA polymerase subunit B; n=12;
Euryarchaeota|Rep: DNA-directed RNA polymerase subunit B
- Thermoplasma acidophilum
Length = 1195
Score = 235 bits (576), Expect = 6e-61
Identities = 116/230 (50%), Positives = 149/230 (64%), Gaps = 2/230 (0%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPFT +GI PD+I NPH+IPSRMT+GH++E I GK++S G D T F+
Sbjct: 963 GLVVPQEDMPFTEDGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTGRFIDGTIFSGE 1022
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ + L YG+ EVMY+G TGR+ A +F+G YYQ+L HMV K H+R+RG
Sbjct: 1023 PE-KSLRDALVKYGFRKSSTEVMYDGITGRRFKADIFVGVIYYQKLHHMVAGKFHARSRG 1081
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCN--FCG 536
PVQIL RQP EGR+R GGLRFGEMERD IAHGAA +++RL + SD ++VC CG
Sbjct: 1082 PVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGAAMVIKDRLLDQSDGTVLYVCGNPSCG 1141
Query: 537 LIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
IAI + R T C C N I I YA KL+ EL+S+ + RLM+
Sbjct: 1142 HIAIYDRRKGTLRCPVCGNTGNIYPIETSYAFKLMRDELISLGVVMRLML 1191
>UniRef50_Q60181 Cluster: DNA-directed RNA polymerase subunit B';
n=11; Archaea|Rep: DNA-directed RNA polymerase subunit B'
- Methanococcus jannaschii
Length = 636
Score = 235 bits (576), Expect = 6e-61
Identities = 118/234 (50%), Positives = 152/234 (64%), Gaps = 6/234 (2%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QED+PFT GI PDIIINPHAIPSRMT+G L+E + GKV + +G D T F+
Sbjct: 379 GLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQLLEMLGGKVGALEGRRIDGTIFSGE 438
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ L+ G+ G EVMY+G TG+K ++++G YYQ+L H+V KIH+R+RG
Sbjct: 439 KEWD-LRKALEALGFKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRG 497
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
PVQ+L RQP EGRAR+GGLRFGEMERD I HGAA L+ERL + SDPY I +C+ CG
Sbjct: 498 PVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDF 557
Query: 543 AIANLRNNTFECKGC------KNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
AI + + C C + +I +R+PYA KLL EL SM I PR+ V
Sbjct: 558 AILDYKRGLKYCPICGEIENLYSSKKIPFVRIPYAFKLLLDELKSMCILPRIKV 611
>UniRef50_Q5CPZ8 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1287
Score = 232 bits (568), Expect = 6e-60
Identities = 113/226 (50%), Positives = 146/226 (64%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QED+PF+ G PD+I+NPH PSRMT+G L+E I K S G T F
Sbjct: 1064 GLIISQEDLPFSETGWCPDLIMNPHGFPSRMTVGKLLELISSKASVLDGNYRYGTAFG-G 1122
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+++ + L ++G+H G E + +G TG I A +F+GP YYQ+LKHMV DK+H+R RG
Sbjct: 1123 TPLEESAKCLVEHGFHYSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARGRG 1182
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P QIL RQP EGR++DGGLR GEMERDC +A+GA+ L ERL SD + +VCN CGL
Sbjct: 1183 PRQILTRQPTEGRSKDGGLRLGEMERDCLVAYGASNLLIERLMLNSDVFETNVCNQCGLF 1242
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
N C CK+ +S IRLPYA KLLFQEL +MN+ PR+
Sbjct: 1243 GYNNY------CHYCKSSQDVSIIRLPYACKLLFQELQAMNVCPRI 1282
>UniRef50_Q9NW08 Cluster: DNA-directed RNA polymerase III subunit
RPC2; n=84; Eukaryota|Rep: DNA-directed RNA polymerase
III subunit RPC2 - Homo sapiens (Human)
Length = 1133
Score = 230 bits (563), Expect = 2e-59
Identities = 113/226 (50%), Positives = 143/226 (63%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPF GI PDII+NPH PSRMT+G LIE + GK G T F +
Sbjct: 908 GLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS 967
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ + L +GY+ G + + +G TG + A ++ GP YYQ+LKHMV DK+H+RARG
Sbjct: 968 -KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARG 1026
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD + + VC CGL+
Sbjct: 1027 PRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 1086
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
+ C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 1087 GYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
>UniRef50_Q54IZ9 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Dictyostelium discoideum AX4
Length = 1608
Score = 227 bits (554), Expect = 3e-58
Identities = 113/229 (49%), Positives = 144/229 (62%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GI +QEDMPF+ GI PDII+NPH PSRMTIG +IE + GK G+ G T F
Sbjct: 1385 GIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVLSGKFGFGTCFGGD 1444
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ IS +L G+ G + + +G TG + +F GP +YQ+LKHMV DK+H+RARG
Sbjct: 1445 -RVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKHMVMDKMHARARG 1503
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P L RQP EGRAR GGLR GEMERDC I +GA+ + ERL SD + ++ C CG +
Sbjct: 1504 PTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISSDRFTVYACKNCGFL 1563
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
C+ CK+ IS I++PYA KLLFQEL +MNI PRL +V
Sbjct: 1564 GYEGY------CQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRLKLV 1606
>UniRef50_Q1L6W1 Cluster: DNA-directed RNA polymerase; n=2;
Embryophyta|Rep: DNA-directed RNA polymerase - Lunularia
cruciata
Length = 789
Score = 226 bits (553), Expect = 4e-58
Identities = 116/240 (48%), Positives = 152/240 (63%), Gaps = 17/240 (7%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ + QED+PFT EGI PDIIINPHA PSR T+G + E GK + +GE ATPFN A
Sbjct: 543 GMVFTQEDLPFTNEGIVPDIIINPHAFPSRQTLGQMCESALGKAIAKRGEQLFATPFNPA 602
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ I+ L + GY+ G E MYNG+TG+ + A++F+G T+YQRL HMV+DKI R+RG
Sbjct: 603 STVESITEALHESGYNGWGMETMYNGYTGKAMVAKIFIGSTFYQRLTHMVEDKIKYRSRG 662
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
V L RQP+ R R GG++FGEMERDC IAHGAA L+ER F +SD + IH+C C +
Sbjct: 663 HVHPLTRQPVSDRKRHGGVKFGEMERDCLIAHGAAATLQERTFHLSDYHEIHICRSCKQM 722
Query: 543 AIANLRNNTFECKGCKNKT-----------------QISQIRLPYAAKLLFQELMSMNIA 671
A + + C+ CK K +I ++ +PYA KLL QEL SM I+
Sbjct: 723 AHMGI-DRIPTCRFCKEKNKKVVKGKKTDKTETKVEEIVKVEIPYACKLLIQELQSMGIS 781
>UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8;
Plasmodium|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum (isolate 3D7)
Length = 1450
Score = 225 bits (550), Expect = 9e-58
Identities = 106/228 (46%), Positives = 148/228 (64%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPFT GI PD+I+NPH PSRMT+G L+E + K + GE + F+
Sbjct: 1227 GLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKAAVMDGEYKYGSIFS-G 1285
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
++I+ +L YG++ E++Y+G TG + +F+GP YYQ+LKHMV DKIH+RARG
Sbjct: 1286 TPFEEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARG 1345
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P Q+L RQP EGR+++GGLR GEMERDC IA+G + L ERL SD +++C CG++
Sbjct: 1346 PRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCNVYICEDCGMM 1405
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
C CK + I++PYA KLLFQEL +MN+ P+++V
Sbjct: 1406 GY------DLYCTFCKKCDKNIVIQMPYACKLLFQELQTMNVFPKIIV 1447
>UniRef50_Q6E6F3 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase - Antonospora
locustae (Nosema locustae)
Length = 1014
Score = 223 bits (545), Expect = 4e-57
Identities = 110/226 (48%), Positives = 145/226 (64%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ + D+PF+ +G PDII+NPH PSRMT+G +IE I GK + G DAT F +
Sbjct: 793 GLVVPETDLPFSEDGQVPDIIMNPHGFPSRMTVGKIIELISGKAAVFTGRQSDATVFRED 852
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ + +S +L +GY G + NG TG VF GP YYQRLKHMV DK+H+R+RG
Sbjct: 853 IT-EDLSHILIKHGYSYCGKDTFTNGITGDVYEGYVFFGPVYYQRLKHMVADKMHARSRG 911
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P +L RQP EG++R+GGLR GEMERDC I +GA+ L ERL SD +R ++C+ CG+I
Sbjct: 912 PRAMLTRQPTEGKSREGGLRLGEMERDCLIGYGASAILCERLMISSDVFRAYICHRCGII 971
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
N+ C CK + + +PYA KLLFQELMSMNI PR+
Sbjct: 972 VYKNM------CTLCKRGDPV-PVDMPYACKLLFQELMSMNILPRI 1010
>UniRef50_A7AM79 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Babesia bovis
Length = 1171
Score = 222 bits (543), Expect = 6e-57
Identities = 108/228 (47%), Positives = 146/228 (64%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QE++PF+ G PD+I+NPH PSRMT+G ++E + K + G D TPF +A
Sbjct: 945 GLIESQENLPFSEHGWVPDLIMNPHGFPSRMTVGKMLELVAAKAAVLNGIFEDGTPF-EA 1003
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
++ I L G+H G E++Y+G TG + +F GP YYQ+LKHMV DKIH+RA G
Sbjct: 1004 DSLPAIERSLIKKGFHPAGKEILYSGITGEPLETLIFTGPMYYQKLKHMVSDKIHARAVG 1063
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P Q L RQP EGR++DGGLR GEMERDC IA+GA+ L ERL SD +++ VC+ CG I
Sbjct: 1064 PRQSLTRQPTEGRSKDGGLRLGEMERDCLIAYGASGLLVERLMLSSDVFQMDVCHQCGFI 1123
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
C CK + Q + + +PYA KLLFQEL +MNI P +++
Sbjct: 1124 GYDGW------CAYCKQRGQTATVAIPYACKLLFQELQAMNIRPNVIL 1165
>UniRef50_A2E3T5 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA polymerase
- Trichomonas vaginalis G3
Length = 1142
Score = 221 bits (539), Expect = 2e-56
Identities = 109/226 (48%), Positives = 142/226 (62%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMP+T +GI PD+I+NPH PSRMT+G +IE + GKV G IG+ T F+
Sbjct: 919 GLIVPQEDMPYTEDGICPDMIMNPHGFPSRMTVGKMIELVSGKVGILTGRIGNGTAFSSD 978
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ I+ L GY G +++ +G TG + A +F GP +YQ LKHMV DK+ +RA G
Sbjct: 979 -RVKDIADDLIAAGYSYSGKDMLMSGITGEPLYAYIFFGPVFYQSLKHMVKDKMQARATG 1037
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
VQ L RQP +GR+R GG+R GEMERDC I +GAA L ER+ SD Y +VC CG I
Sbjct: 1038 QVQYLTRQPTQGRSRQGGMRLGEMERDCLIGYGAASILYERMLISSDVYEANVCAKCGFI 1097
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
C CK K + +R+PYA KLLF ELM+M IAP++
Sbjct: 1098 GYEGY------CTHCKTKEYMKIVRMPYACKLLFYELMAMGIAPKV 1137
>UniRef50_Q0V2J9 Cluster: DNA-directed RNA polymerase; n=1;
Phaeosphaeria nodorum|Rep: DNA-directed RNA polymerase -
Phaeosphaeria nodorum (Septoria nodorum)
Length = 1137
Score = 221 bits (539), Expect = 2e-56
Identities = 108/222 (48%), Positives = 142/222 (63%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ +QEDMPF +GI PDII+NPH PSRMT+G ++E + GK G + T F +
Sbjct: 909 GLIVQQEDMPFNDQGINPDIIMNPHGFPSRMTVGKMMELLSGKAGVLNGTLEYGTAFGGS 968
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ ++ +L G+ G + + +G TG F GP YYQ+LKHMV DK+H+RARG
Sbjct: 969 -RVEDMADILVSKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHARARG 1027
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P IL RQP EGRARDGGLR GEMERDC IA+GA+Q L ERL SD + + VC CG +
Sbjct: 1028 PRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMISSDAHNVDVCEKCGQM 1087
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNI 668
+ CK C+++ + +I +PYAAKLL QEL SMN+
Sbjct: 1088 GYSGY------CKLCESEKAVRRITMPYAAKLLIQELGSMNV 1123
>UniRef50_Q4QD43 Cluster: DNA-directed RNA polymerase polypeptide,
putative; n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase polypeptide, putative - Leishmania major
Length = 1132
Score = 219 bits (535), Expect = 6e-56
Identities = 106/223 (47%), Positives = 139/223 (62%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKIS 203
DMPF G+ PD+I+NPH PSRMT+G L+E + K ++ +G +GD T F + IS
Sbjct: 915 DMPFNERGMCPDMIMNPHGFPSRMTVGKLLELVCSKAAALRGSMGDGTAFGGE-SADSIS 973
Query: 204 SLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 383
L +GY+ G +V Y+G TG + VF GP YYQRLKHMV DK+H+R+ GP +L R
Sbjct: 974 QQLLSFGYNYHGKDVFYSGITGELMQGYVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTR 1033
Query: 384 QPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRN 563
QP EGR+R GGLR GEMERDC + +GA+ L ERL SD + +C+ CG NL
Sbjct: 1034 QPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLISSDMFTADICHVCG-----NLGY 1088
Query: 564 NTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVVS 692
N C CK K S++ +PYA KLL QEL M ++ RL + S
Sbjct: 1089 NN-RCTYCKTKGTTSKVNMPYAFKLLIQELQGMGVSLRLTMDS 1130
>UniRef50_Q4A245 Cluster: Putative DNA-directed RNA polymerase II
subunit; n=1; Emiliania huxleyi virus 86|Rep: Putative
DNA-directed RNA polymerase II subunit - Emiliania
huxleyi virus 86
Length = 1156
Score = 219 bits (534), Expect = 8e-56
Identities = 107/231 (46%), Positives = 145/231 (62%), Gaps = 5/231 (2%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ D P T +G+ PDIIINPHAIPSRMTIG L+E + KV+ +GE D TPF
Sbjct: 925 GVTMPAADFPCTADGVAPDIIINPHAIPSRMTIGMLMEMVLSKVACYEGETQDGTPFTGN 984
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
N++ I+ L+ +G GNE++YNG +G + + +F+ P YYQRLKHMV DK H+R RG
Sbjct: 985 -NIELIADRLETHGMQRYGNEMLYNGMSGEMLESMIFIAPCYYQRLKHMVVDKSHARNRG 1043
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
Q+L R P EGR+RDGGLR GEME+D I+HGA ++RLFE SD + C CG
Sbjct: 1044 AQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQSDIFECVACEKCGHF 1103
Query: 543 A-----IANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
A +++N+ C+ CK + +LPY+ KLL QEL + +I+ L
Sbjct: 1104 AREGTDDTSVKNSGMWCEHCKTGKHCTHTQLPYSMKLLIQELAAAHISATL 1154
>UniRef50_UPI000065EBB2 Cluster: DNA-directed RNA polymerase III
subunit 127.6 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase III subunit 2) (RPC2).; n=2;
Deuterostomia|Rep: DNA-directed RNA polymerase III
subunit 127.6 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase III subunit 2) (RPC2). - Takifugu rubripes
Length = 1206
Score = 215 bits (526), Expect = 7e-55
Identities = 113/241 (46%), Positives = 145/241 (60%), Gaps = 15/241 (6%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGH---------------LIECIQGKVS 137
G+ QEDMPF GI PDII+NPH PSRMT+G+ LIE + GK
Sbjct: 966 GLIVPQEDMPFCDTGICPDIIMNPHGYPSRMTVGNKMCVRVCDCVCQVGKLIELLAGKAG 1025
Query: 138 SNKGEIGDATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQR 317
G T F + V+ + L +GY+ +G + + +G TG + A ++ GP YYQ+
Sbjct: 1026 VLDGRFHYGTAFGGS-KVKDVCEDLIRHGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQK 1084
Query: 318 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEV 497
LKHMV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL
Sbjct: 1085 LKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMIS 1144
Query: 498 SDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPR 677
SD + + VC CGL+ + C CK+ +S +R+PYA KLLFQEL SMNI PR
Sbjct: 1145 SDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPR 1198
Query: 678 L 680
L
Sbjct: 1199 L 1199
>UniRef50_Q236N3 Cluster: DNA-directed RNA polymerase, beta subunit
family protein; n=2; Oligohymenophorea|Rep: DNA-directed
RNA polymerase, beta subunit family protein - Tetrahymena
thermophila SB210
Length = 1141
Score = 214 bits (522), Expect = 2e-54
Identities = 108/229 (47%), Positives = 145/229 (63%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPF+ +G PD+I+NPH PSRMT+G L+E + K + G+ T F
Sbjct: 913 GLIVNQEDMPFSEKGWVPDLIMNPHGYPSRMTVGKLLELLGSKAAVLSGQFKYGTAFGGD 972
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ +SS+L G+ G +V+ +G TG + VF GP +YQRLKHMV DK+H+RA+G
Sbjct: 973 -KMADLSSILVQNGFSYTGKDVIISGITGEYMQCYVFCGPVFYQRLKHMVADKVHARAKG 1031
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
V L RQP EGRA+DGGLR GEMERD +A ++ L ERL SD + + VC CG I
Sbjct: 1032 RVTTLTRQPTEGRAKDGGLRLGEMERDSLLAFASSNLLIERLMISSDKFSVQVCEKCGFI 1091
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
+T CK C+ Q+S++ +PYA KLLFQEL+SMNI P+L +V
Sbjct: 1092 ------QHTNSCKMCQT-DQVSKVVMPYACKLLFQELLSMNIKPKLNLV 1133
>UniRef50_Q7R5G4 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 1238
Score = 213 bits (521), Expect = 3e-54
Identities = 104/231 (45%), Positives = 142/231 (61%), Gaps = 3/231 (1%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN-- 176
G+ Q D+PFT +GI PD+I+NPH PSRMT+ L+E + K +GE D T F
Sbjct: 1006 GLIVPQSDLPFTSQGIVPDLIMNPHGYPSRMTVAKLLELLSNKSGCFRGEQTDGTCFRTK 1065
Query: 177 -DAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSR 353
D + ++ L+ G+ G +V+Y+G TG I +F GP YYQ+LKHMV DKIHSR
Sbjct: 1066 TDETFLAELYDSLRVAGFSYSGKDVLYSGLTGDVIPVYIFNGPIYYQKLKHMVKDKIHSR 1125
Query: 354 ARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFC 533
GP+ +L RQP EGR GGLR GEMERDC I++GA+ L ER SD + +VC C
Sbjct: 1126 GTGPITMLTRQPTEGRRVHGGLRMGEMERDCAISYGASALLLERFMLSSDDFLAYVCETC 1185
Query: 534 GLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
GL + +N C C++ + +IR+PYAAKL+ QEL+SM + R+ +
Sbjct: 1186 GLFSYE--KNGVLWCPTCQSGKDVVKIRIPYAAKLMIQELISMGVLVRMQL 1234
>UniRef50_Q7QSN9 Cluster: DNA-directed RNA polymerase; n=2; Giardia
intestinalis|Rep: DNA-directed RNA polymerase - Giardia
lamblia ATCC 50803
Length = 1293
Score = 211 bits (515), Expect = 2e-53
Identities = 113/238 (47%), Positives = 146/238 (61%), Gaps = 10/238 (4%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN-- 176
G+ R ED+PFT +GITPDII+NPHAIPSRMTIG L+E + K+ + G D T FN
Sbjct: 1053 GMLLRHEDLPFTLDGITPDIIMNPHAIPSRMTIGQLMESVASKLGALSGHEVDGTAFNAP 1112
Query: 177 DAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 356
++I++ L GY E M NG TG + ++F+GPT+YQRLKHMV DKI SR
Sbjct: 1113 PGSTDKQIAADLHARGYQKHNYEAMMNGMTGEMMTYRIFIGPTFYQRLKHMVLDKISSRN 1172
Query: 357 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 536
GP+ L RQP EGR+ GG+R GEME+D IAHGA LR+RL SD VC CG
Sbjct: 1173 TGPIVTLTRQPNEGRSNYGGMRIGEMEKDAFIAHGATAILRDRLLFSSDVSEFLVCQNCG 1232
Query: 537 LIA-IANLRNNTFE----CKGCKNKT---QISQIRLPYAAKLLFQELMSMNIAPRLMV 686
+I A+ R T + C C + ++I +PYAAKL FQE++ M + PR+ V
Sbjct: 1233 IICWHADSRKLTTKKSPHCMICSESSTTDSFARITIPYAAKLFFQEIIGMGVFPRIEV 1290
>UniRef50_Q1L6V7 Cluster: DNA-directed RNA polymerase; n=1; Sphagnum
sp. JL-2005|Rep: DNA-directed RNA polymerase - Sphagnum
sp. JL-2005
Length = 650
Score = 210 bits (514), Expect = 2e-53
Identities = 106/224 (47%), Positives = 145/224 (64%), Gaps = 1/224 (0%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G + QED+P+T +GI PDIIINPHA+PSR T G ++EC+ G+V + G+ AT A
Sbjct: 423 GAVFPQEDLPYTRQGIVPDIIINPHALPSRQTFGQIMECLLGEVVATSGKPCFATR---A 479
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA-R 359
Q+++ LL Y Y G E M NG TG + A + +GPT+YQRL HMV+DKI R
Sbjct: 480 ETPQRVNELLFQYHYGRGGAEYMCNGTTGMPLEALITMGPTFYQRLDHMVEDKIKFRGIG 539
Query: 360 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 539
G + L QP+ R GG++FGEMERDC + HGA+ LR R F +SDPY++++C C
Sbjct: 540 GSINPLTHQPVRDRNSLGGVKFGEMERDCMLGHGASSTLRXRYFLLSDPYKMNICAACRR 599
Query: 540 IAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIA 671
A + + T +C CKN +I QI++PYA KLL+QEL+SM I+
Sbjct: 600 PATMDTK-XTPKCXXCKNGKRIVQIQIPYACKLLWQELLSMGIS 642
>UniRef50_Q197F1 Cluster: Putative uncharacterized protein; n=1; Aedes
taeniorhynchus iridescent virus|Rep: Putative
uncharacterized protein - Aedes taeniorhynchus iridescent
virus
Length = 1140
Score = 209 bits (511), Expect = 5e-53
Identities = 105/230 (45%), Positives = 149/230 (64%), Gaps = 4/230 (1%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGK---VSSN-KGEIGDATP 170
G+ + QEDMPFT G+TPDIIINP+ IPSRMTI +I + GK V+ N + G++
Sbjct: 915 GMIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQIISTVMGKLYTVNPNPRFRNGNSFQ 974
Query: 171 FNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 350
N ++++ L+ G+ G+EVMY+G TG +I + +F+GPTYY RLKHMV DK+H+
Sbjct: 975 ENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQSTIFMGPTYYHRLKHMVKDKMHA 1034
Query: 351 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 530
R+ G V L RQP GR++ GGLRFGEME+DC + HGA QFL ER+F SDP++I VC
Sbjct: 1035 RSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQFLNERMFLNSDPFQIDVCKD 1094
Query: 531 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
CG+++ + + +C C + + +PY+ K L QEL M I ++
Sbjct: 1095 CGMMS-----STSKKCHHC-GSINVKRCNIPYSCKNLLQELNGMGIKTKI 1138
>UniRef50_UPI00004993B0 Cluster: DNA-directed RNA polymerase subunit;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: DNA-directed
RNA polymerase subunit - Entamoeba histolytica HM-1:IMSS
Length = 1106
Score = 209 bits (510), Expect = 6e-53
Identities = 104/233 (44%), Positives = 144/233 (61%), Gaps = 6/233 (2%)
Frame = +3
Query: 6 IQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN-DA 182
+ Y+++DMPFT G+TPDIIINPHA PSRMTI L+E + KV + KGE DATPF D
Sbjct: 870 VHYQEKDMPFTESGMTPDIIINPHAFPSRMTIAMLVESMASKVGALKGEYQDATPFKFDE 929
Query: 183 VN--VQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 356
N V L YGY+ G+E +Y+G G ++ + +++G YYQRL H V DK R+
Sbjct: 930 ENSAVDYFGKQLLKYGYNYYGSEPLYSGIYGNELQSDIYIGIVYYQRLVHQVKDKYQVRS 989
Query: 357 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 536
GP+ I+ QP++GR R GG+RFGEMERD +AHG A + +RLFE SD +VC CG
Sbjct: 990 TGPISIVTHQPIKGRKRGGGIRFGEMERDSLVAHGTAMLVHDRLFECSDKCYHYVCTKCG 1049
Query: 537 LIAIANLRNNTFE---CKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
I R+ ++ C+ C + + +I++PY + L EL +MN+ L V
Sbjct: 1050 SICTIK-RSKEYDKMVCQSCGPTSIVKKIQIPYVFRYLAAELSAMNVRLNLRV 1101
>UniRef50_A2SSM5 Cluster: DNA-directed RNA polymerase; n=1;
Methanocorpusculum labreanum Z|Rep: DNA-directed RNA
polymerase - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 637
Score = 206 bits (504), Expect = 3e-52
Identities = 114/257 (44%), Positives = 157/257 (61%), Gaps = 31/257 (12%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QE+MPFT GI PD++INPHA+PSRMTIGH++E I GK + +G +AT F
Sbjct: 376 GLITPQENMPFTAAGIAPDLVINPHAVPSRMTIGHMLEMIGGKAGALEGSRVNATSFR-K 434
Query: 183 VNVQKI--SSLLQ-------DYGYHLRGN-----EVMYN-------GHTGRKI------- 278
V+KI SS Q + G ++ + +V+ + HTGR++
Sbjct: 435 TQVEKIFDSSFAQNRLLNDKEIGKDVKSSTLTREQVLRHQLAEAGFAHTGREVMYDGITG 494
Query: 279 ---NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQ 449
A +++G YYQ+L HMV K+H+R+RGPVQ+L RQP EGRAR+GGLRFGEMERD
Sbjct: 495 RRFQADIYIGVIYYQKLYHMVSTKMHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVM 554
Query: 450 IAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYA 629
I HGAA L+ERL + SD + +VC CG++A+ + + C C +T I ++ + YA
Sbjct: 555 IGHGAAMALKERLLDESDAVKQYVCARCGMVAMYDAKQKMTRCLACGAETDIYEVEMSYA 614
Query: 630 AKLLFQELMSMNIAPRL 680
KLL E+ SM IAPRL
Sbjct: 615 FKLLLDEMKSMGIAPRL 631
>UniRef50_UPI0000E487B4 Cluster: PREDICTED: similar to Polymerase
(RNA) III (DNA directed) polypeptide B; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
Polymerase (RNA) III (DNA directed) polypeptide B -
Strongylocentrotus purpuratus
Length = 830
Score = 203 bits (496), Expect = 3e-51
Identities = 104/216 (48%), Positives = 134/216 (62%)
Frame = +3
Query: 33 FTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLL 212
+ C P I+ NPH PSRMT+G LIE + GK +G+ T F V I L
Sbjct: 616 YFCHFSVPQIM-NPHGFPSRMTVGKLIEFLAGKAGVLEGKFHYGTAFGGD-KVVDICEDL 673
Query: 213 QDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM 392
+ +G++ G + + +G TG + A ++ GP YYQ+LKHMV DK+H+RA+GP +L RQP
Sbjct: 674 RKHGFNYLGKDFLTSGITGEPLTAYIYFGPVYYQKLKHMVLDKMHARAKGPRAVLTRQPT 733
Query: 393 EGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTF 572
EGRARDGGLR GEMERDC I +GA+ L ERL SD +++ VC CGLI ++
Sbjct: 734 EGRARDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFQVDVCGDCGLI------GHSG 787
Query: 573 ECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
C C IS +R+PYA KLLFQEL SMNI PRL
Sbjct: 788 WCPYCHCSQNISSLRIPYACKLLFQELQSMNIIPRL 823
>UniRef50_Q4ZJA8 Cluster: DNA-directed RNA polymerase; n=3;
Lymphocystivirus|Rep: DNA-directed RNA polymerase - Fish
lymphocystis disease virus (FLDV)
Length = 1018
Score = 203 bits (495), Expect = 4e-51
Identities = 101/223 (45%), Positives = 144/223 (64%), Gaps = 1/223 (0%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ YRQEDMPFT EG+ PD+IINPHA PSRMTI ++++ G + G+I DATPF
Sbjct: 799 GMIYRQEDMPFTAEGVVPDLIINPHAFPSRMTINYILQMCYGLAACYTGKIYDATPFKRY 858
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+++ L + MY G TG+K ++++F+GP YQRL+H+V +KIHSR G
Sbjct: 859 NLTEELKELALELKLET-WETTMYCGLTGKKFSSKIFIGPCDYQRLRHLVTNKIHSRISG 917
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+ L QP+ GR+R GG++ GEME+ C+++HGA+ L+E LF++SD Y I VC C I
Sbjct: 918 PIDNLTHQPVAGRSRYGGIKVGEMEQWCKLSHGASAALKESLFDMSDKYTIPVCKTCKTI 977
Query: 543 AIANLRNNTFE-CKGCKNKTQISQIRLPYAAKLLFQELMSMNI 668
++ FE C+ C + +I PY +KLLFQELM++ I
Sbjct: 978 ------SDDFEYCRKC-DDIEIEMKNCPYTSKLLFQELMAIGI 1013
>UniRef50_Q1L6W4 Cluster: DNA-directed RNA polymerase; n=1; Isoetes
sp. JL-2005|Rep: DNA-directed RNA polymerase - Isoetes
sp. JL-2005
Length = 623
Score = 203 bits (495), Expect = 4e-51
Identities = 96/209 (45%), Positives = 134/209 (64%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ + QED+PFT +GI PD+IINPHA P+R T+G L+EC+ GK ++ DATPF +
Sbjct: 414 GMCFHQEDLPFTRDGIVPDLIINPHAFPTRQTLGQLMECLAGKAAAVSAREQDATPFVER 473
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
++ + S L G+ G E MY+G G ++ +V +G T+YQRL HM +DK+ R G
Sbjct: 474 -SLPRFSEELHKAGFQRTGMECMYSGRVGTRMKVRVNIGVTFYQRLTHMAEDKMKYRRTG 532
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
V L RQP+ R R GG+RFGEMERDC IAHGA+ L+ERLF +SDPY +++C C
Sbjct: 533 SVHPLTRQPIVDRKRHGGIRFGEMERDCMIAHGASATLQERLFLLSDPYVMYICTKCRRT 592
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYA 629
A +N C+ CK + I ++ +PYA
Sbjct: 593 ASVE-QNKVPRCRFCKCGSNIVRVNVPYA 620
>UniRef50_Q259Y6 Cluster: DNA-directed RNA polymerase; n=8;
Euphyllophyta|Rep: DNA-directed RNA polymerase - Oryza
sativa (Rice)
Length = 1343
Score = 200 bits (489), Expect = 2e-50
Identities = 106/232 (45%), Positives = 140/232 (60%), Gaps = 7/232 (3%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G QE+ PFT +GI PDI+INPHA P+R T G L+E GK + G + ATPF A
Sbjct: 1107 GFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYATPFTTA 1166
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ I+ L G+ G E + NG TG ++++ +F+GPT+YQRL HM +DK+ R G
Sbjct: 1167 -SFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTG 1225
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
PV L RQP+ R R GG++FGEMERDC +AHGAA L ERLF +SD ++HVC C +
Sbjct: 1226 PVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERV 1285
Query: 543 AIANLRN-------NTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPR 677
A +R C C++ I +I +PY AKLL+QEL SM I R
Sbjct: 1286 ANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLR 1337
>UniRef50_Q54BM1 Cluster: DNA-directed RNA polymerase; n=2;
Eukaryota|Rep: DNA-directed RNA polymerase -
Dictyostelium discoideum AX4
Length = 1130
Score = 196 bits (478), Expect = 5e-49
Identities = 103/229 (44%), Positives = 137/229 (59%), Gaps = 8/229 (3%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN---VQ 194
+MPFT G+ PD+IINP+A PSRMTIG L+E + GK + G+ DAT F N +
Sbjct: 901 NMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKFQDATAFQFDENNTAID 960
Query: 195 KISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 374
L G++ GNE MY+G TG++ ++F G YYQRL+HMV DK RA G V
Sbjct: 961 FFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNA 1020
Query: 375 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG----LI 542
L RQP++GR GG+RFGEMERD +AHGA+ L +RL + SD +I VC CG +
Sbjct: 1021 LTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLTIY 1080
Query: 543 AIANLRNNTF-ECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
+ + N T ECK CK+ I+ I +PY L EL ++NI +L V
Sbjct: 1081 SKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAAVNITMKLQV 1129
>UniRef50_A3AIW9 Cluster: DNA-directed RNA polymerase; n=2; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 799
Score = 195 bits (476), Expect = 8e-49
Identities = 113/266 (42%), Positives = 150/266 (56%), Gaps = 40/266 (15%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIP-------------------SRMT--IGHLIEC 119
G +QED PF+ GI PD+I+NPH P SR+ G +IE
Sbjct: 529 GTIVQQEDFPFSERGICPDLIMNPHGFPRCKINLSKRFFQPYINNTSSRVEGYTGKMIEL 588
Query: 120 IQGKVSSNKGEI--GDA--TPFNDAVNVQKISSLLQDYGYHLRGNEVMYN---------- 257
+ GK + G+ G A P +A V+ IS L +G+ G +++Y+
Sbjct: 589 LGGKAGVSCGQFHYGSAFGEPSGNADKVEDISRTLVKHGFSYNGKDLLYSDRYFKTVPKS 648
Query: 258 -----GHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 422
G G A VF+GP YYQ+LKHMV DK+H+RA GP +L RQP EGR+RDGGLR
Sbjct: 649 LFCLSGILGHPCQAYVFMGPIYYQKLKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLR 708
Query: 423 FGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQ 602
GEMERDC IA+GA+ + ERL SDPY++ VC CGL+ N + C CKN
Sbjct: 709 LGEMERDCLIAYGASMLIFERLLISSDPYQVQVCRKCGLLGYYNHKLKASYCSMCKNGEN 768
Query: 603 ISQIRLPYAAKLLFQELMSMNIAPRL 680
++++R+PYA KLLFQEL +MN+ PRL
Sbjct: 769 MAKMRMPYACKLLFQELQAMNVVPRL 794
>UniRef50_Q5YF54 Cluster: DNA-directed RNA polymerase; n=3; Infectious
spleen and kidney necrosis virus|Rep: DNA-directed RNA
polymerase - Rock bream iridovirus
Length = 1053
Score = 194 bits (474), Expect = 1e-48
Identities = 97/229 (42%), Positives = 146/229 (63%), Gaps = 2/229 (0%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIE-CIQGKVSSNKGEIGDATPFN- 176
G+ Y Q DMPFT +G+ PD++INPHA PSRMT+ +L++ C + + G+ DAT FN
Sbjct: 836 GMMYDQWDMPFTADGVVPDLVINPHAFPSRMTVHYLLQMCFELGAVAGGGKGYDATAFNS 895
Query: 177 DAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 356
D ++ K L++ GY +VMY G TGR+ + VF+ P YQ+LKH+V +K+H+R
Sbjct: 896 DGTDLLKT---LEELGY---AKQVMYCGRTGRRFESLVFMAPCPYQKLKHLVANKVHART 949
Query: 357 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 536
GPV L RQP+ GR+RDGG++ GEME+ C+I+HGAA L E + +SDPY + VC+ C
Sbjct: 950 TGPVDPLTRQPVAGRSRDGGIKIGEMEQWCKISHGAAAALHESMTTMSDPYTVPVCSVCH 1009
Query: 537 LIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLM 683
+ + ++ C+ C++ + +PY +KL FQ+L S+ I +M
Sbjct: 1010 V-----MTDSYKVCRHCRS-VSVQSYAMPYTSKLFFQQLASIGIKTCIM 1052
>UniRef50_Q98S96 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1049
Score = 194 bits (474), Expect = 1e-48
Identities = 104/221 (47%), Positives = 133/221 (60%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
Q+DMPF+ +GI PDII+NPH PSRMTIG IE I K G+ D + F +N+
Sbjct: 838 QQDMPFSEKGICPDIIMNPHGFPSRMTIGKTIEIILSKSGCISGKFKDGSIFKK-ININT 896
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
I L+ +G+ G + MYNG TG IN Q++ G +YQRLKHMV DKIHSRA G L
Sbjct: 897 IVKSLRSFGFVSNGEDFMYNGITGNLINNQIYSGIVFYQRLKHMVKDKIHSRATGIKSKL 956
Query: 378 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 557
QP+EGR++ GGLRFGEMERDC I+ GA++ +RL SD Y G+I +N
Sbjct: 957 TYQPVEGRSKGGGLRFGEMERDCLISFGASELALDRLLLNSDCYEAKFDKNSGIIHTSN- 1015
Query: 558 RNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
+ T + +++PYA KLL QEL SMNI RL
Sbjct: 1016 -----------SNTNVVAVKIPYACKLLLQELQSMNIIARL 1045
>UniRef50_Q2I5U8 Cluster: DNA-directed RNA polymerase; n=12;
Fungi|Rep: DNA-directed RNA polymerase - Coelomomyces
stegomyiae
Length = 1080
Score = 194 bits (474), Expect = 1e-48
Identities = 88/115 (76%), Positives = 100/115 (86%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ YRQEDMPFT EG+TPD+IINPHAIPSRMTIGHL+EC+ GKVSS G GDATPF D
Sbjct: 579 GMTYRQEDMPFTAEGLTPDLIINPHAIPSRMTIGHLVECLLGKVSSLTGSEGDATPFTD- 637
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIH 347
V VQ+IS LL++ GY RG EVMYNGHTG+K++AQ+FLGPTYYQRLKHMVDDKIH
Sbjct: 638 VTVQQISDLLRECGYQQRGFEVMYNGHTGKKLSAQIFLGPTYYQRLKHMVDDKIH 692
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = +3
Query: 345 HSRARGPVQILVRQPMEGRARDGGLRF 425
+SR+RGP+QIL RQP+EGR+RDGGLRF
Sbjct: 1054 NSRSRGPLQILTRQPVEGRSRDGGLRF 1080
>UniRef50_Q91F97 Cluster: 428L; n=1; Invertebrate iridescent virus
6|Rep: 428L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 1193
Score = 194 bits (473), Expect = 2e-48
Identities = 102/229 (44%), Positives = 138/229 (60%), Gaps = 9/229 (3%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGE-IGDATPFND 179
G+ + DMPF +G PD+IINPH +PSRMTI ++ I GK K E GDA+PF +
Sbjct: 955 GMILEEVDMPFMEDGSIPDMIINPHCLPSRMTINQIMASIMGKTCCAKNETFGDASPFQE 1014
Query: 180 AVNVQ---KISSL---LQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
+ + KI +L L++ GY+ G E M G G+K+ A++F GP YY RL HMV DK
Sbjct: 1015 SSLEKPQDKIHALCKELEECGYNYNGTETMMCGWNGKKLRAEIFFGPVYYHRLTHMVSDK 1074
Query: 342 IHSRARGPVQ--ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRI 515
I SRA + + RQP+ GRA +GGLR GEME+DC + HG ++FL E++F+ SD + I
Sbjct: 1075 IFSRASTNQKRHAITRQPLNGRANEGGLRIGEMEKDCMLVHGISKFLHEKMFDQSDKFII 1134
Query: 516 HVCNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSM 662
++C C N F C GC N I + P+AAKL FQEL +M
Sbjct: 1135 NLCVPCKSYFKVVKTQNGFFCSGC-NGIDIVKFNCPFAAKLFFQELTAM 1182
>UniRef50_P28365 Cluster: DNA-directed RNA polymerase I subunit RPA2;
n=2; Intramacronucleata|Rep: DNA-directed RNA polymerase
I subunit RPA2 - Euplotes octocarinatus
Length = 1166
Score = 180 bits (439), Expect(2) = 3e-47
Identities = 90/182 (49%), Positives = 114/182 (62%), Gaps = 3/182 (1%)
Frame = +3
Query: 6 IQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---N 176
+ + Q DMPFT GITPD+IINPHA PSRMT+G LI+ + K S +GE F +
Sbjct: 906 VLWPQVDMPFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKTVETFQRYD 965
Query: 177 DAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 356
D V L D G++ GNE+MY+G G + A +F+G YYQRL+HMV DK +R
Sbjct: 966 DNDIVGHFGKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARG 1025
Query: 357 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 536
GP+ IL QP++GR + GG+RFGEMERD +AHGAA L +RLF SD VC CG
Sbjct: 1026 TGPIDILTHQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCG 1085
Query: 537 LI 542
I
Sbjct: 1086 SI 1087
Score = 31.5 bits (68), Expect(2) = 3e-47
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 561 NNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
N CK CK + ++ LP+ + L EL SM I + V
Sbjct: 1122 NEKVICKVCKKNSNCKKVALPFVLRFLANELASMGIKLKFTV 1163
>UniRef50_P20028 Cluster: DNA-directed RNA polymerase I subunit RPA2;
n=5; Endopterygota|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Drosophila melanogaster (Fruit fly)
Length = 1129
Score = 187 bits (456), Expect = 2e-46
Identities = 102/238 (42%), Positives = 141/238 (59%), Gaps = 15/238 (6%)
Frame = +3
Query: 9 QYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN---D 179
+Y ED+PFT G+ PDI+ NPH PSRMTI +IE + GK ++ G + DATPF +
Sbjct: 887 KYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEE 946
Query: 180 AVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 359
+ +L+ GY+ G E +Y+G GR++ A +F G +YQRL+HMV DK R+
Sbjct: 947 NTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRST 1006
Query: 360 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 539
G V+ QP++GR R GG+RFGEMERD I+HGAA L++RLF SD VC+ CG
Sbjct: 1007 GAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGS 1066
Query: 540 IAIANL-----RNNT-------FECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPR 677
I +A L RN T C+ C + + +S I +P++ K L EL S+NI R
Sbjct: 1067 I-LAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123
>UniRef50_A3C638 Cluster: DNA-directed RNA polymerase; n=4; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1134
Score = 187 bits (455), Expect = 3e-46
Identities = 98/242 (40%), Positives = 135/242 (55%), Gaps = 27/242 (11%)
Frame = +3
Query: 24 DMPFTCE-GITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN---- 188
DMPF+ G+ PD+IINPHA PSRMTI L+E I K S KG+ DATPF +V
Sbjct: 873 DMPFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAKAGSLKGKFIDATPFASSVKERSN 932
Query: 189 --VQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V ++ +L YG++ G E++Y+G G ++ ++FLGP YYQRL+HMV DK R G
Sbjct: 933 SIVDELGPMLASYGFNYHGTEILYSGVFGTEMKCEIFLGPVYYQRLRHMVSDKFQVRTTG 992
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
+ + RQP+ GR GG+RFGEMERD +AHGA+ L +RL SD + VC+ CG +
Sbjct: 993 RIDQITRQPIGGRKYGGGIRFGEMERDALLAHGASYLLHDRLHSCSDYHIADVCSICGSL 1052
Query: 543 AIANLRNN--------------------TFECKGCKNKTQISQIRLPYAAKLLFQELMSM 662
A + + F C+ CK + + +PY + L EL +M
Sbjct: 1053 LTATVIKSESQKKAKRDMLGLPTVKPPKNFACQACKTSKGMETVAMPYVFRYLASELAAM 1112
Query: 663 NI 668
NI
Sbjct: 1113 NI 1114
>UniRef50_Q7QXS5 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 1235
Score = 187 bits (455), Expect = 3e-46
Identities = 100/232 (43%), Positives = 135/232 (58%), Gaps = 4/232 (1%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GI++RQ DMPFT GI PD+IINPHA PSRMT+G LIE + K+ + + D++PF +
Sbjct: 1002 GIRWRQTDMPFTSSGIVPDLIINPHAFPSRMTVGMLIESLASKIGVHYADFVDSSPFQWS 1061
Query: 183 VNVQKIS----SLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 350
+ I LL+ ++ G+EVMY+ TG + A +F+G YYQRL+HMV DK
Sbjct: 1062 DERRAIDVFGEQLLKTGQFNRYGSEVMYSAITGDPMPADIFIGVVYYQRLRHMVSDKYQV 1121
Query: 351 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNF 530
RA GP + +QP++GR R GGLRFGEMERD +AHGA LR RL SD VC
Sbjct: 1122 RAEGPSDKITKQPIKGRKRGGGLRFGEMERDALLAHGAMASLRGRLCTESDATEHVVCAA 1181
Query: 531 CGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
CG + L + C+ CK I++P +L +L +M + R V
Sbjct: 1182 CGSLLGMQLGGSV--CRECKATGHGRLIQIPMVLLVLANDLAAMGVRMRFNV 1231
>UniRef50_Q9LK40 Cluster: DNA-directed RNA polymerase; n=29;
Spermatophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1172
Score = 185 bits (451), Expect = 9e-46
Identities = 101/240 (42%), Positives = 137/240 (57%), Gaps = 18/240 (7%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECI-----------QGKVSSNKG 149
G Q++ PFT +GI PDI+INPHA PSR T G L+E +G ++
Sbjct: 925 GYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTK 984
Query: 150 EIGDATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHM 329
ATPF+ V +I+ L G+ GNE +YNG +G + + +F+GPT+YQRL HM
Sbjct: 985 LTRHATPFSTP-GVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHM 1043
Query: 330 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPY 509
+DK+ R GPV L RQP+ R R GG++FGEMERDC IAHGA+ L ERLF +SD
Sbjct: 1044 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSS 1103
Query: 510 RIHVCNFCGLIAIANLRNNTF-------ECKGCKNKTQISQIRLPYAAKLLFQELMSMNI 668
++H+C C A R + C+ C + + ++ +PY AKLL QEL SM I
Sbjct: 1104 QMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGI 1163
>UniRef50_A2EN74 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA polymerase
- Trichomonas vaginalis G3
Length = 1104
Score = 185 bits (451), Expect = 9e-46
Identities = 98/226 (43%), Positives = 132/226 (58%), Gaps = 9/226 (3%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKG-EIGDATPF-NDAVN- 188
QE+MPF GITPD+IINPHA PSRMTIG LIE + GK+ +++ DATPF +D N
Sbjct: 858 QENMPFCENGITPDVIINPHAFPSRMTIGMLIESMCGKLRASQDCAFFDATPFTHDEKNR 917
Query: 189 -VQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGP 365
++ +L G+ GNE MY+G TG + A +F+G YYQRL+HMV DK RA G
Sbjct: 918 ITDEVGQMLAKEGFEYYGNEAMYSGITGEQFKADIFMGVVYYQRLRHMVGDKYQVRATGK 977
Query: 366 VQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIA 545
+ + RQP++GR + GG+R GEMERD +A G LR+R SD + +CN CG
Sbjct: 978 MNNITRQPLKGRKKGGGIRLGEMERDGLLAQGVTFLLRDRFMWCSDGHVAKLCNRCGSFM 1037
Query: 546 IANLRN--NTFE---CKGCKNKTQISQIRLPYAAKLLFQELMSMNI 668
++ N E C CK + + +PY + L E +MNI
Sbjct: 1038 FTQTKHDENGVEETYCTYCKKSGNCTSVYVPYVLRYLCAEFAAMNI 1083
>UniRef50_Q9H9Y6 Cluster: DNA-directed RNA polymerase I subunit RPA2;
n=53; Coelomata|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Homo sapiens (Human)
Length = 1135
Score = 184 bits (448), Expect = 2e-45
Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
EDMPFT G+ PDI+ NPH PSRMTIG LIE + GK ++ G DATPF + +
Sbjct: 900 EDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSAL 959
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
+ +L+ GY+ G E +Y+G +G ++ A +F+G YYQRL+HMV DK R G
Sbjct: 960 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI--- 542
+ QP+ GR GG+RFGEMERD +AHG + L +RLF SD HVC CG +
Sbjct: 1020 RVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSP 1079
Query: 543 -------AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
+ + +RN + C C I + +PY + EL +MNI +L VV
Sbjct: 1080 LLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1135
>UniRef50_A0BY74 Cluster: DNA-directed RNA polymerase; n=2; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1115
Score = 184 bits (447), Expect = 3e-45
Identities = 94/233 (40%), Positives = 139/233 (59%), Gaps = 16/233 (6%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN--- 188
Q DMPF+ G+ PDIIINPHA PSRMTIG LIE + K + +GE+ + PF + N
Sbjct: 876 QIDMPFSESGMVPDIIINPHAFPSRMTIGMLIESMAAKANVLQGEMFETHPFQNYENDNV 935
Query: 189 VQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPV 368
V L +GY+ GNE +Y+G G + ++ G YYQRL+HMV DK +R+ GPV
Sbjct: 936 VDYFGKQLIKHGYNYHGNETLYSGIYGTPLKVDIYFGVVYYQRLRHMVSDKSQARSMGPV 995
Query: 369 QILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG---- 536
+L +QP++GR + GG+R GEMERD IAHG A + +RL + SD ++C+ CG
Sbjct: 996 DVLTQQPIKGRKKGGGIRLGEMERDALIAHGVAYCINDRLLKCSDYSETYICDKCGNMLA 1055
Query: 537 ------LIAIANLRNNTFE---CKGCKNKTQISQIRLPYAAKLLFQELMSMNI 668
L+++ N+++ C CK + + S++ +P+ + L EL +MN+
Sbjct: 1056 TYQFVQLLSLENIQSVQSSHPYCVRCK-QAKCSKVAIPFVLRYLVNELAAMNV 1107
>UniRef50_Q7Q416 Cluster: DNA-directed RNA polymerase; n=1;
Anopheles gambiae str. PEST|Rep: DNA-directed RNA
polymerase - Anopheles gambiae str. PEST
Length = 609
Score = 183 bits (445), Expect = 5e-45
Identities = 80/178 (44%), Positives = 116/178 (65%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QED+PF G++PD+++NPH PSRMT+G +E + K +G+ T F +
Sbjct: 431 GLIVEQEDLPFNDYGMSPDMVMNPHGFPSRMTVGKTLELLGSKAGVLEGKFHYGTAFGGS 490
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
+ L ++G++ G +V Y+G TG + ++ GP YYQ+LKHMV DK+H+RARG
Sbjct: 491 -KCSDLQDELFNHGFNYLGKDVFYSGITGEPLEVYIYSGPVYYQKLKHMVQDKMHARARG 549
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 536
P +L RQP +GR+R+GGLR GEMERDC I++GA+ + ERL SD + + VCN CG
Sbjct: 550 PRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFDVDVCNVCG 607
>UniRef50_Q5RM00 Cluster: DNA-directed RNA polymerase; n=40;
Fungi|Rep: DNA-directed RNA polymerase - Fomitiporia
mediterranea
Length = 898
Score = 182 bits (443), Expect = 8e-45
Identities = 83/114 (72%), Positives = 96/114 (84%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GI YRQEDMPFT EGITPDIIINPHAIPSRMTIGHL+EC+ K+++ G GDATPF D
Sbjct: 786 GITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATIVGNEGDATPFTD- 844
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKI 344
+ V +SS+L++ GY RG EVMY+GHTGRK+ AQV+LGPTYYQRLKHMVDDKI
Sbjct: 845 LTVDSVSSVLREKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKI 898
>UniRef50_Q1L6V8 Cluster: DNA-directed RNA polymerase; n=1;
Selaginella erythropus|Rep: DNA-directed RNA polymerase -
Selaginella erythropus
Length = 593
Score = 182 bits (442), Expect = 1e-44
Identities = 95/226 (42%), Positives = 133/226 (58%), Gaps = 1/226 (0%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QED+ FT +GI PD+IINPHA PSR T+ ++E + GK ++ +GD TPF
Sbjct: 368 GMMLSQEDLLFTQQGIVPDVIINPHAFPSRQTLAQMLESLVGKTAAMGLCLGD-TPFTH- 425
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA-R 359
+ ++++ L G+ G + +Y+G TGR A G T+YQRL H+ DK+ R
Sbjct: 426 LRAEQLAQKLAKRGFQKWGQDRVYSGCTGRMTGAMATFGLTFYQRLNHLSRDKMKCRGGN 485
Query: 360 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 539
GPV L QP++ R R GG +FGEMERDC +AHGA+ ++ERLF VSD +HVC C
Sbjct: 486 GPVHPLTHQPVKDRRRQGGTKFGEMERDCLVAHGASATVQERLFLVSDKSLVHVCANCCR 545
Query: 540 IAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPR 677
+A N + C CK + + +PYA KLL EL +M + R
Sbjct: 546 LASFNSQQQP-GCLFCKRXQRPVAVEMPYACKLLRMELQAMGVDMR 590
>UniRef50_Q9FXG4 Cluster: DNA-directed RNA polymerase; n=79;
Magnoliophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1233
Score = 181 bits (440), Expect = 2e-44
Identities = 101/254 (39%), Positives = 138/254 (54%), Gaps = 33/254 (12%)
Frame = +3
Query: 24 DMPFT-CEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN---- 188
DMPF G+ PD+IINPHA PSRMTI L+E I K S G+ DATPF DAV
Sbjct: 972 DMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNG 1031
Query: 189 ---------VQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
V + S+L++ G++ G E +Y+G+ G ++ ++F+GP YYQRL+HMV DK
Sbjct: 1032 EEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDK 1091
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHV 521
R+ G V L QP++GR R GG+RFGEMERD +AHGA+ L +RL SD + V
Sbjct: 1092 FQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADV 1151
Query: 522 CNFCGLIAIANLRN-------------------NTFECKGCKNKTQISQIRLPYAAKLLF 644
C+ CG + +++ N C CK + + +PY + L
Sbjct: 1152 CSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLA 1211
Query: 645 QELMSMNIAPRLMV 686
EL SMNI L +
Sbjct: 1212 AELASMNIKMTLQL 1225
>UniRef50_Q9C8S4 Cluster: DNA-directed RNA polymerase; n=3;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1114
Score = 181 bits (440), Expect = 2e-44
Identities = 101/254 (39%), Positives = 138/254 (54%), Gaps = 33/254 (12%)
Frame = +3
Query: 24 DMPFT-CEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN---- 188
DMPF G+ PD+IINPHA PSRMTI L+E I K S G+ DATPF DAV
Sbjct: 853 DMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNG 912
Query: 189 ---------VQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
V + S+L++ G++ G E +Y+G+ G ++ ++F+GP YYQRL+HMV DK
Sbjct: 913 EEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDK 972
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHV 521
R+ G V L QP++GR R GG+RFGEMERD +AHGA+ L +RL SD + V
Sbjct: 973 FQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADV 1032
Query: 522 CNFCGLIAIANLRN-------------------NTFECKGCKNKTQISQIRLPYAAKLLF 644
C+ CG + +++ N C CK + + +PY + L
Sbjct: 1033 CSLCGSLLTSSVVNVQQKKLIQEIGKLPPGRTPKKVTCYSCKTSKGMETVAMPYVFRYLA 1092
Query: 645 QELMSMNIAPRLMV 686
EL SMNI L +
Sbjct: 1093 AELASMNIKMTLQL 1106
>UniRef50_A6RAC1 Cluster: DNA-directed RNA polymerase; n=6;
Ascomycota|Rep: DNA-directed RNA polymerase - Ajellomyces
capsulatus NAm1
Length = 1214
Score = 181 bits (440), Expect = 2e-44
Identities = 89/174 (51%), Positives = 110/174 (63%), Gaps = 3/174 (1%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN---DAVNVQ 194
DMPF+ GI PDIIINPHA PSRMTIG IE + GK + G D+TPF +
Sbjct: 931 DMPFSETGIQPDIIINPHAFPSRMTIGMFIESLAGKAGALHGLAQDSTPFRFSEEHTASD 990
Query: 195 KISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 374
L+ GY+ GNE MY+G TGR+ A ++LG YYQRL+HMV+DK R GPV
Sbjct: 991 FFGEQLRKAGYNFHGNEPMYSGITGREFAADIYLGVVYYQRLRHMVNDKFQVRTTGPVNA 1050
Query: 375 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 536
L QP++GRA+ GG+R GEMERD +AHGAA L++RL SD R +C CG
Sbjct: 1051 LTGQPVKGRAKGGGIRVGEMERDSLLAHGAAFLLQDRLMNCSDTTRSWICRTCG 1104
>UniRef50_Q8SSB7 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1062
Score = 177 bits (431), Expect = 2e-43
Identities = 99/228 (43%), Positives = 127/228 (55%), Gaps = 13/228 (5%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK-- 197
DMPFT G PDIIINPHA PSRMTIG LIE I GKV G D T F + +++
Sbjct: 835 DMPFTESGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGTVFKKSFLLEQEE 894
Query: 198 -----------ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKI 344
+ S L+ +G++ GNE MY+G G + A +F+G YYQRLKHMV DK
Sbjct: 895 GDDEKVRRKEYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKF 954
Query: 345 HSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVC 524
R +G V RQP+ GR + GG+RFGEMERD I+HGA+ L++RL + SD C
Sbjct: 955 QVRTKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDRLLKSSDSTVFEYC 1014
Query: 525 NFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNI 668
C I N N C + + + +PY K L EL++MNI
Sbjct: 1015 GTCRSILFTN--NGDCIC----GSSDLKAVEMPYVFKYLCCELLAMNI 1056
>UniRef50_Q4N2L4 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=2; Theileria|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Theileria parva
Length = 1235
Score = 175 bits (427), Expect = 7e-43
Identities = 102/243 (41%), Positives = 140/243 (57%), Gaps = 23/243 (9%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDAT---------PF 173
EDMPF GI PD+I NPH +PSRMTIG LIE + GKV+S G+ D+T P
Sbjct: 985 EDMPFLENGIVPDVIFNPHGLPSRMTIGKLIEGMAGKVASIYGKPQDSTCFQAYYSENPE 1044
Query: 174 NDAVNVQKIS-------SLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMV 332
N ++++ SL++ GY G E MY G G +I +F+G YYQRL+HMV
Sbjct: 1045 NGDEEMEEVDVVDYFGKSLIKS-GYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMV 1103
Query: 333 DDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYR 512
DK R+ GPV + +QP++GR GG+RFGEMERD IAHG A L++RL SD +
Sbjct: 1104 SDKAQVRSTGPVDTITKQPVKGRKNLGGIRFGEMERDALIAHGTANLLQDRLLHCSDAHM 1163
Query: 513 IHVCNFCGLI---AIANLRNNTFE----CKGCKNKTQISQIRLPYAAKLLFQELMSMNIA 671
+VC CG I +I++L NT C C+ ++ + +PY + + EL +MNI
Sbjct: 1164 AYVCPKCGSILSPSISSLEANTKRQVSICTICQVNCKL--VTIPYVLRYVANELATMNIG 1221
Query: 672 PRL 680
+L
Sbjct: 1222 IKL 1224
>UniRef50_Q27493 Cluster: DNA-directed RNA polymerase; n=3;
Chromadorea|Rep: DNA-directed RNA polymerase -
Caenorhabditis elegans
Length = 1127
Score = 175 bits (427), Expect = 7e-43
Identities = 95/243 (39%), Positives = 132/243 (54%), Gaps = 23/243 (9%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
E +PF+ G+ PDII NPH PSRMTIG +IE + GK ++ GE DA+PF D +
Sbjct: 874 ESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAI 933
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
LL GY+ GNE Y+G GR++ Q+F G YYQRL+HM+ DK RA GP+
Sbjct: 934 NHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPID 993
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG--LIA 545
+ QP++GR + GG+RFGEMERD IAHG + L++RL SD + C CG L
Sbjct: 994 PITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSV 1053
Query: 546 IANLR------------------NNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIA 671
+ + R T C+ C Q+ +++P + L EL +MN+
Sbjct: 1054 LMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVK 1113
Query: 672 PRL 680
+L
Sbjct: 1114 IKL 1116
>UniRef50_P22138 Cluster: DNA-directed RNA polymerase I subunit RPA2;
n=22; Eukaryota|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1203
Score = 175 bits (425), Expect = 1e-42
Identities = 87/176 (49%), Positives = 109/176 (61%), Gaps = 3/176 (1%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATP--FN-DAVNVQ 194
DMPF+ GI PDIIINPHA PSRMTIG +E + GK + G D+TP FN D
Sbjct: 935 DMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWIFNEDDTPAD 994
Query: 195 KISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 374
L GY+ GNE MY+G TG ++ A +++G YYQRL+HMV+DK R+ GPV
Sbjct: 995 YFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRSTGPVNS 1054
Query: 375 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
L QP++GR R GG+R GEMERD I HG + L++RL SD + VC CG I
Sbjct: 1055 LTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQASVCRECGSI 1110
>UniRef50_A4RSZ5 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus lucimarinus CCE9901
Length = 1145
Score = 171 bits (417), Expect = 1e-41
Identities = 95/235 (40%), Positives = 135/235 (57%), Gaps = 17/235 (7%)
Frame = +3
Query: 18 QEDMPFTCE-GITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF----NDA 182
+EDMPF+ G+ PD+IINPHA PSRMTIG L+E + K ++ G DATPF +
Sbjct: 906 EEDMPFSDRTGLRPDVIINPHAFPSRMTIGMLVESLAAKAGASTGIFADATPFKHSDKEI 965
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD--DKIHSRA 356
++ LL++ GY+ G+E + NG TG + +F+G YYQRL+HMV H R+
Sbjct: 966 SPTEEYGKLLRESGYNFCGSERLVNGCTGESFSVDIFIGLVYYQRLRHMVSLFHTFHVRS 1025
Query: 357 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 536
GP L QP++GR GG+RFGEMERD +AHG A +L L SD VCN CG
Sbjct: 1026 TGPNNPLTMQPIKGRKSGGGIRFGEMERDSLLAHGVA-YLVSLLHICSDNRDAWVCNMCG 1084
Query: 537 -----LIAIANLRNNTF-----ECKGCKNKTQISQIRLPYAAKLLFQELMSMNIA 671
L +A++R + + C+ C + ++ +I +P+ L EL +MNI+
Sbjct: 1085 SLIAPLTCVASIRTDEYSSRRTSCRVCDSAHKLERISIPHVFIYLTAELAAMNIS 1139
>UniRef50_Q6C6G0 Cluster: DNA-directed RNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA-directed RNA polymerase - Yarrowia
lipolytica (Candida lipolytica)
Length = 1165
Score = 170 bits (414), Expect = 3e-41
Identities = 86/201 (42%), Positives = 120/201 (59%), Gaps = 4/201 (1%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATP--FNDA-VNVQ 194
DMPF+ GI PD+IINPHA PSRMTIG +E + K + G DATP F++ +
Sbjct: 907 DMPFSESGIQPDVIINPHAFPSRMTIGMFVESLAAKSGALHGMAQDATPWQFSETNTAAE 966
Query: 195 KISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 374
L GY+ GNE MY+G TG+++ +++G +YQRL+HMV+DK R+ GPV
Sbjct: 967 YFGEQLLKAGYNYHGNEPMYSGVTGQELRCDIYVGVVFYQRLRHMVNDKFQVRSTGPVNP 1026
Query: 375 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG-LIAIA 551
L QP++GR R GG+R GEMERD I HG + L++RL SD + +C CG L A
Sbjct: 1027 LTMQPVKGRKRSGGIRVGEMERDALIGHGTSYLLQDRLLNCSDYTQTSMCRTCGSLTATQ 1086
Query: 552 NLRNNTFECKGCKNKTQISQI 614
++ T +G K + +Q+
Sbjct: 1087 EAQSTTGHRRGVKCRRCATQL 1107
>UniRef50_Q5CNH7 Cluster: DNA-directed RNA polymerase; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium hominis
Length = 1281
Score = 169 bits (412), Expect = 5e-41
Identities = 104/258 (40%), Positives = 137/258 (53%), Gaps = 37/258 (14%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIG-DATPFN------ 176
QE+MPF+ G+ PDI+ NPH PSRMTIG L+E + GK + G DATPFN
Sbjct: 1015 QENMPFSESGMVPDILFNPHGFPSRMTIGMLLESMGGKAACIHGARSLDATPFNINISDD 1074
Query: 177 --------------DAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQ 314
+ V L+ G+ G E +YNG TG ++ +F+G YYQ
Sbjct: 1075 LSRSEENCEDDKAGEKTTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQ 1134
Query: 315 RLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFE 494
RL+HMV DK RA GP+ L RQP++GR R GG+RFGEMERD I++G + L +RL
Sbjct: 1135 RLRHMVADKAQVRATGPIDALTRQPVKGRKRHGGIRFGEMERDSLISYGVSSILVDRLLI 1194
Query: 495 VSDPYRIHVCNFCGLI----------------AIANLRNNTFECKGCKNKTQISQIRLPY 626
SD +R +VC CGLI ++N C+ CK+ +I I LPY
Sbjct: 1195 CSDEHRAYVCPKCGLIISSISKRAMAQSISSSKLSNCIPPIAVCRVCKSPCRI--ITLPY 1252
Query: 627 AAKLLFQELMSMNIAPRL 680
+ L EL +MNI RL
Sbjct: 1253 IFRYLSNELAAMNIVIRL 1270
>UniRef50_O74633 Cluster: DNA-directed RNA polymerase I subunit RPA2;
n=14; Ascomycota|Rep: DNA-directed RNA polymerase I
subunit RPA2 - Neurospora crassa
Length = 1234
Score = 166 bits (403), Expect = 6e-40
Identities = 81/174 (46%), Positives = 106/174 (60%), Gaps = 3/174 (1%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN-DAVNV--Q 194
DMPF+ GI PD+IINPHA PSRMTIG +E + GK + G D+TPF D N
Sbjct: 950 DMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGLAQDSTPFKFDEQNTAGD 1009
Query: 195 KISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 374
L GY+ GNE +Y+G TG + A +++G YYQRL+HMV+DK R GPV
Sbjct: 1010 YFGHQLMKAGYNYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVP 1069
Query: 375 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG 536
QP++GR + GG+R GEMERD +AHG + L++RL SD + +C CG
Sbjct: 1070 TTGQPIKGRKKGGGIRVGEMERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCG 1123
>UniRef50_P42487 Cluster: DNA-directed RNA polymerase subunit 2; n=1;
African swine fever virus BA71V|Rep: DNA-directed RNA
polymerase subunit 2 - African swine fever virus (strain
BA71V) (ASFV)
Length = 1242
Score = 157 bits (382), Expect = 2e-37
Identities = 81/216 (37%), Positives = 122/216 (56%), Gaps = 1/216 (0%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKIS 203
DMPFT +G+ PD+I+NPH+ PSRMT G +IE G ++ +G + D T F +NVQ +S
Sbjct: 1014 DMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFLP-INVQLLS 1072
Query: 204 SLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRL-KHMVDDKIHSRARGPVQILV 380
L G G + M+NG TG +A +F+GPTY+QRL K ++DD+ + GP L
Sbjct: 1073 ERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALT 1132
Query: 381 RQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLR 560
QP++G+ GGLR GEME A GA Q + E+ + SD ++C CG AI N
Sbjct: 1133 GQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYNAS 1192
Query: 561 NNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNI 668
+ ++C C + I + ++ + E+ + N+
Sbjct: 1193 HPIYKCMNCDVQADIGMVDSRRSSIVFQHEMRAANV 1228
>UniRef50_Q06VE3 Cluster: RNA polymerase subunit; n=3; Ascovirus|Rep:
RNA polymerase subunit - Trichoplusia ni ascovirus 2c
Length = 1160
Score = 152 bits (369), Expect = 8e-36
Identities = 83/220 (37%), Positives = 126/220 (57%), Gaps = 5/220 (2%)
Frame = +3
Query: 24 DMPFTCE-GITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN--VQ 194
DMPF + G+ PDI++N H++PSRMT+ ++ + GK++ D +PF VN +
Sbjct: 934 DMPFVADSGMIPDILVNVHSMPSRMTVNQIMASMAGKLACITARNIDGSPFQLDVNDVLF 993
Query: 195 KISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 374
+ L + Y G E M NG TG + +F+G YY R +V KI S ++
Sbjct: 994 DLCEQLAEVKYDKDGCETMCNGLTGEMFSCPIFIGVVYYLRPVQLVRHKIFSSTTTTMRN 1053
Query: 375 -LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIA 551
L RQP+ GRA +GGLR GEME+D + HG+ FL+ER+ +SD + + +C CG +
Sbjct: 1054 HLTRQPLNGRAHEGGLRVGEMEKDDLLRHGSINFLQERMLTLSDKHIMMICTICGSESHV 1113
Query: 552 NLRNN-TFECKGCKNKTQISQIRLPYAAKLLFQELMSMNI 668
LR++ +F C CK + ++ I +PYAAKL FQ L + +
Sbjct: 1114 ALRSDGSFVCLRCK-QLMVNPITIPYAAKLFFQYLQGVGL 1152
>UniRef50_Q5US39 Cluster: DNA-directed RNA polymerase; n=12;
Dikarya|Rep: DNA-directed RNA polymerase - Strangospora
pinicola
Length = 698
Score = 151 bits (367), Expect = 1e-35
Identities = 73/101 (72%), Positives = 79/101 (78%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GI YRQEDMPFT EG+ PDIIINPHAIPSRMTI HLIEC KVSS G GDATPF +
Sbjct: 599 GITYRQEDMPFTSEGLVPDIIINPHAIPSRMTIAHLIECQLSKVSSLTGREGDATPFTE- 657
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPT 305
V V +S LL++ GY RG EVMYNGHTGRK+ AQVFLGPT
Sbjct: 658 VTVDSVSKLLRENGYQSRGFEVMYNGHTGRKLVAQVFLGPT 698
>UniRef50_Q98S72 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1109
Score = 149 bits (360), Expect = 9e-35
Identities = 79/224 (35%), Positives = 116/224 (51%), Gaps = 4/224 (1%)
Frame = +3
Query: 9 QYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN 188
+Y E++PF+ GI PDI+ NPH PSRMTIG +IE + GK + G D++PF +N
Sbjct: 880 KYEVENLPFSETGIIPDILFNPHGFPSRMTIGMVIESLSGKSGALNGNFNDSSPFTSFLN 939
Query: 189 VQK---ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 359
K L++ G+ G E+ Y+G G + VF+G +YQRLKHM+ DK
Sbjct: 940 CNKSYIFGEFLRENGFEFYGKEMFYSGFVGLPLQTDVFVGVIHYQRLKHMILDKFQVSNN 999
Query: 360 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 539
L RQP++GR G +R GEMERD + HG L E++ + SD + + + N
Sbjct: 1000 SARNHLTRQPIKGRKLGGSIRLGEMERDALLGHGCIFLLHEKMQKSSDLHGVFIENTNSD 1059
Query: 540 IAIANLRNNTFECKGCKN-KTQISQIRLPYAAKLLFQELMSMNI 668
I + K K+ +I +PY + L EL +N+
Sbjct: 1060 IKDLFFNKYNYNSKFLSTIKSYPRKIFVPYVLRYLICELSVLNL 1103
>UniRef50_Q4QA33 Cluster: DNA-directed RNA polymerase; n=6;
Trypanosomatidae|Rep: DNA-directed RNA polymerase -
Leishmania major
Length = 1616
Score = 145 bits (351), Expect = 1e-33
Identities = 85/241 (35%), Positives = 132/241 (54%), Gaps = 20/241 (8%)
Frame = +3
Query: 6 IQYRQEDMPF-TCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
+ R D+PF T GITPD+IINPHA PSRMT+G ++E + KV + +G D + ++
Sbjct: 1363 LHIRSHDLPFATASGITPDVIINPHAFPSRMTVGMVLEIMTAKVGAIEGRFIDNSAWSTV 1422
Query: 183 VNVQKISSLLQDY----GYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 350
+++ L+ + GY+ G E + +G +G ++ A VF+G YQRL+HMV DK +
Sbjct: 1423 DEQPRVAELIGEALVKAGYNRYGREHLIDGISGEEMKADVFMGICGYQRLRHMVSDKWQA 1482
Query: 351 RARGPVQIL-----VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRI 515
RAR QP++GR R GG+R GEMERD ++HG ++ + +RL VSD +
Sbjct: 1483 RARTDAHTYRAVTKTGQPVKGRKRHGGVRVGEMERDGLLSHGISEVVVDRLLHVSDKTKA 1542
Query: 516 HVCNFCGLIAIANLRNNT-----FECKGC-----KNKTQISQIRLPYAAKLLFQELMSMN 665
+C CG + R+ T C+ C ++ I+ + +P +L EL S+
Sbjct: 1543 FICPRCGSLLSLYERHATEYGTWRTCRFCGAGADESTDSIAMVEIPQVLRLWAAELTSIG 1602
Query: 666 I 668
I
Sbjct: 1603 I 1603
>UniRef50_Q3LW79 Cluster: Second-largest subunit of RNA polymerase
III; n=1; Bigelowiella natans|Rep: Second-largest subunit
of RNA polymerase III - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 1074
Score = 144 bits (349), Expect = 2e-33
Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 1/227 (0%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF-ND 179
G+ + PF G PD I+NP SRMT+G ++E + KV KG ++ F ++
Sbjct: 855 GLMGNKIHFPFNLNGQIPDFIMNPAGFTSRMTMGQVLESLFTKVVLAKGNPFKSSIFESN 914
Query: 180 AVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 359
+ ++ + L G E M N G N+ +F GP +Y +LKH+V +KI SR+
Sbjct: 915 KLYLKDCTQSLILCDTEFSGKETMINPKKGSIYNSTIFTGPIFYHKLKHLVSNKIQSRSS 974
Query: 360 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 539
G IL +QP++GR + GGLR GEME+DC IA G L ER+ E SD ++ + G+
Sbjct: 975 GRKHILTKQPVKGRGKQGGLRIGEMEKDCIIAFGCTSVLVERMLENSDSHKFILVKKSGI 1034
Query: 540 IAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
I +N + +T NK I + R+ YA KLLFQEL + NI+ R+
Sbjct: 1035 IDASNKKLST------TNK--IYKNRISYAFKLLFQELQATNISIRI 1073
>UniRef50_A7AT93 Cluster: DNA-directed RNA polymerase, beta subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase, beta subunit, putative - Babesia bovis
Length = 1283
Score = 132 bits (318), Expect = 1e-29
Identities = 69/166 (41%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Frame = +3
Query: 204 SLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVR 383
+LLQ GY G E MY G G +I +F+G +YQRL+HMV DK RA GPV + +
Sbjct: 1110 TLLQA-GYDYYGTESMYCGSLGTEIRTHIFIGCIFYQRLRHMVSDKAQVRATGPVDAITK 1168
Query: 384 QPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL-- 557
QP++GR GG+RFGEMERD IAHGA+ L++RL SD + +VC CG I A +
Sbjct: 1169 QPVKGRKNRGGIRFGEMERDSLIAHGASALLQDRLIHCSDAHTAYVCPNCGSIISATVTS 1228
Query: 558 -----RNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
+ + C+ CK ++ + +PY + + EL S+N+ RL
Sbjct: 1229 VGATNKRSVSHCRICKVACKL--VTIPYVLRYVAHELASINVGIRL 1272
Score = 67.3 bits (157), Expect = 4e-10
Identities = 31/51 (60%), Positives = 36/51 (70%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF 173
E+MPF GI PDII NPH +PSRMTIG LIEC+ GK ++ G DAT F
Sbjct: 1010 ENMPFLESGIIPDIIFNPHGLPSRMTIGKLIECMAGKSAAIHGAFQDATCF 1060
>UniRef50_Q6YQW3 Cluster: DNA-directed RNA polymerase subunit beta;
n=21; Mollicutes|Rep: DNA-directed RNA polymerase subunit
beta - Onion yellows phytoplasma
Length = 1273
Score = 128 bits (308), Expect = 2e-28
Identities = 64/162 (39%), Positives = 97/162 (59%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+ED+P+ +G DI++NP +PSRM IG ++E G + G I ATP D VN
Sbjct: 1047 KEDLPYMADGTPIDIMLNPLGVPSRMNIGQILEIHLGMAAKKLG-IKVATPVFDGVNDYD 1105
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
+ ++++ G V+Y+G TG ++++ +G Y +L HMVDDK+H+R GP ++
Sbjct: 1106 LKEIMKEANLDPDGKMVLYDGRTGEPYDSRISVGVMYMVKLSHMVDDKLHARNVGPYTLV 1165
Query: 378 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QPM G+ ++GG RFGEME A+GAA L+E L SD
Sbjct: 1166 TQQPMGGKVQNGGQRFGEMEVWALYAYGAAHTLQEILTVKSD 1207
>UniRef50_Q5FM97 Cluster: DNA-directed RNA polymerase subunit beta;
n=336; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Lactobacillus acidophilus
Length = 1213
Score = 128 bits (308), Expect = 2e-28
Identities = 68/162 (41%), Positives = 95/162 (58%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+EDMP+ +G DI +NP +PSRM IG L+E G + G I ATP D N
Sbjct: 939 EEDMPYLPDGTPVDICLNPMGVPSRMNIGQLLELHLGAAARQLG-IHVATPVFDGANEND 997
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
+ ++ G G V+Y+G TG + +V +G +Y +L HMVDDKIH+R+ GP ++
Sbjct: 998 VWDTVRQAGMDKDGKTVIYDGRTGEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLV 1057
Query: 378 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+A+ GG RFGEME A+GAA L+E L SD
Sbjct: 1058 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSD 1099
>UniRef50_Q6F0L7 Cluster: DNA-directed RNA polymerase subunit beta;
n=277; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Mesoplasma florum (Acholeplasma florum)
Length = 1284
Score = 126 bits (305), Expect = 4e-28
Identities = 66/179 (36%), Positives = 100/179 (55%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKI 200
EDMP +G DI++NP IPSRM IG ++E G + G + ATP + VN +
Sbjct: 1017 EDMPHLEDGTPVDILLNPQGIPSRMNIGQILEIHLGMAAKKLG-VKIATPVFEGVNSNDL 1075
Query: 201 SSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILV 380
++ + G G + +G TG I+ + +G Y +L HMVDDK+H+R+ GP ++
Sbjct: 1076 DEIMAEAGMENYGKVKLIDGQTGEAIDKPISVGVMYMLKLSHMVDDKLHARSVGPYSLIT 1135
Query: 381 RQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANL 557
+QP+ G+A++GG RFGEME A+GAA LRE L SD + + ++ N+
Sbjct: 1136 QQPLGGKAQNGGQRFGEMEVWALEAYGAAHTLREILTIKSDDLKGRTKTYEAIVRSKNI 1194
>UniRef50_A6DPM7 Cluster: DNA-directed RNA polymerase subunit beta;
n=1; Lentisphaera araneosa HTCC2155|Rep: DNA-directed RNA
polymerase subunit beta - Lentisphaera araneosa HTCC2155
Length = 1263
Score = 124 bits (299), Expect = 2e-27
Identities = 64/162 (39%), Positives = 96/162 (59%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+ D+PF +G DII+NP +PSRM +G ++E G ++ G I ATP D
Sbjct: 1057 KSDLPFMKDGTVVDIILNPLGVPSRMNVGQILETHLGMAANRMG-IKIATPVFDGCPESI 1115
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
I+ +L++ GY G +Y+G TG + ++ +G Y +L H+V +KIH+RA GP ++
Sbjct: 1116 INDMLEEVGYDRDGKARLYDGRTGDSFDQRITVGMIYMLKLDHLVVNKIHARAVGPYSLV 1175
Query: 378 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+A+ GG RFGEME A+GAA L+E L SD
Sbjct: 1176 TQQPLGGKAQHGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1217
>UniRef50_Q9Z9M2 Cluster: DNA-directed RNA polymerase subunit beta;
n=111; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Bacillus halodurans
Length = 1180
Score = 123 bits (297), Expect = 4e-27
Identities = 63/162 (38%), Positives = 98/162 (60%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+EDMP+ +G DI++NP +PSRM IG ++E G + G + A+P D + +
Sbjct: 942 EEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHLGMAARRLG-LHVASPVFDGASEED 1000
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
+ + L++ G G ++Y+G TG + +V +G Y +L HMVDDK+H+R+ GP ++
Sbjct: 1001 VWATLEEAGMARDGKTILYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLV 1060
Query: 378 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+A+ GG RFGEME A+GAA L+E L SD
Sbjct: 1061 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSD 1102
>UniRef50_Q67JT3 Cluster: DNA-directed RNA polymerase subunit beta;
n=85; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Symbiobacterium thermophilum
Length = 1250
Score = 122 bits (295), Expect = 7e-27
Identities = 67/162 (41%), Positives = 94/162 (58%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+EDMPF +G DII+ P +PSRM IG ++E G + G + A+P D N Q
Sbjct: 906 EEDMPFMPDGTPIDIILTPLGVPSRMNIGQIMEIHLGWAAKTLG-MYVASPVFDGANEQD 964
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
I +L G V+Y+G TG + +V +G Y +L H+VDDKIH+R+ GP ++
Sbjct: 965 IREMLLKAHLPPNGKTVLYDGKTGEPFDNEVTVGYKYMLKLHHLVDDKIHARSTGPYSLV 1024
Query: 378 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+A+ GG RFGEME A+GAA L+E L SD
Sbjct: 1025 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSD 1066
>UniRef50_Q97EG9 Cluster: DNA-directed RNA polymerase subunit beta;
n=52; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Clostridium acetobutylicum
Length = 1241
Score = 122 bits (295), Expect = 7e-27
Identities = 68/162 (41%), Positives = 95/162 (58%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+EDMPF +G I +NP +PSRM IG ++E G ++N G ATP D +
Sbjct: 954 EEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGWAAANLGW-HIATPVFDGALEPE 1012
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
I L+ GY G V+Y+G TG + +V +G Y +L H+VDDKIH+R+ GP ++
Sbjct: 1013 IVECLKRAGYAEDGKTVLYDGRTGEAFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLV 1072
Query: 378 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+A+ GG RFGEME A+GAA L+E L SD
Sbjct: 1073 TQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSD 1114
>UniRef50_Q8KG15 Cluster: DNA-directed RNA polymerase subunit beta;
n=11; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Chlorobium tepidum
Length = 1303
Score = 122 bits (294), Expect = 9e-27
Identities = 64/161 (39%), Positives = 90/161 (55%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKI 200
EDMPF +G DI++NP +PSRM IG L E G G + TP ++
Sbjct: 1096 EDMPFMEDGTPVDIVLNPLGVPSRMNIGQLYETSLGWAGKKLG-VKFKTPIFSGATYTEV 1154
Query: 201 SSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILV 380
L+ G G +++G TG + + +V +G Y +L H+VDDKIH+R+ GP ++
Sbjct: 1155 QEYLEKAGLPGHGKVKLFDGRTGEQFHDEVTVGYIYMLKLSHLVDDKIHARSIGPYSLIT 1214
Query: 381 RQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+A+ GG RFGEME A+GAA LRE L SD
Sbjct: 1215 QQPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSD 1255
>UniRef50_Q8V4V3 Cluster: DNA-directed RNA polymerase 132 kDa
polypeptide; n=62; Poxviridae|Rep: DNA-directed RNA
polymerase 132 kDa polypeptide - Monkeypox virus
Length = 1164
Score = 122 bits (294), Expect = 9e-27
Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 22/243 (9%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECI-----QGKVSSNKGEIGDAT-PFND 179
+ ++P+ GITPD+IIN +I SR TI LIE I K +NKGE P ++
Sbjct: 899 ETELPYDENGITPDVIINSTSIFSRKTISMLIEVILTAAYSTKPYNNKGENRPVCFPSSN 958
Query: 180 AVNVQKISSLL-QDYGYH------------LRGNEVMYNGHTGRKINAQVFLGPTYYQRL 320
++ Q Y Y + +++Y+ T + ++VF GP YY RL
Sbjct: 959 ETSIDAYMQFAKQCYEYSNPKLSEEELSDKIFCEKILYDPETDKPYESKVFFGPIYYLRL 1018
Query: 321 KHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVS 500
+H+ DK R RG L+RQ EGR R GG++FGEMERDC IAHGAA + E L +
Sbjct: 1019 RHLTQDKATVRCRGKKTKLIRQANEGRKRGGGIKFGEMERDCLIAHGAANTITEVLKDSE 1078
Query: 501 DPYR-IHVCNFCGLIAIANLR--NNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIA 671
+ Y+ +++C CG IA A ++ N C +++I + +K+ ++ + +
Sbjct: 1079 EDYQDVYICENCGDIA-AQIKSINTCLRCSKLNLSPLLTKIDTTHVSKVFLTQMNARGVK 1137
Query: 672 PRL 680
+L
Sbjct: 1138 VKL 1140
>UniRef50_Q3LVX3 Cluster: Second-largest subunit of DNA-directed RNA
polymerase I; n=1; Bigelowiella natans|Rep:
Second-largest subunit of DNA-directed RNA polymerase I -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1137
Score = 120 bits (290), Expect = 3e-26
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 6/203 (2%)
Frame = +3
Query: 18 QEDMPFTC-EGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQ 194
+ED+PF+ +GI P++ +NPH+ PSRMTIG L E K S G++ + + F +
Sbjct: 898 REDLPFSFFDGIIPEVSLNPHSFPSRMTIGMLKEMALLKNSIFTGKLLNLSDFTKHRKRE 957
Query: 195 -----KISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 359
IS ++YG+ +M +G G + + G +YQRL MV+DK+ R
Sbjct: 958 YDWYNDISVFFKEYGHTNINESLMIDGRLGITVKTFFYNGVVFYQRLPQMVNDKMQFSFR 1017
Query: 360 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 539
P + L +QP GR G +RFGEME+D I+HGA+ + +RL + SD Y +C C
Sbjct: 1018 SPTEPLTKQPRRGRKYGGAIRFGEMEKDALISHGASALVNDRLSKSSDYYVTLLCVNCNN 1077
Query: 540 IAIANLRNNTFECKGCKNKTQIS 608
+ + + F C K +S
Sbjct: 1078 LRV-GFNKDDFSCFKSNRKINLS 1099
>UniRef50_Q64NJ7 Cluster: DNA-directed RNA polymerase subunit beta;
n=25; Bacteroidetes|Rep: DNA-directed RNA polymerase
subunit beta - Bacteroides fragilis
Length = 1270
Score = 120 bits (289), Expect = 4e-26
Identities = 62/163 (38%), Positives = 91/163 (55%)
Frame = +3
Query: 15 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQ 194
RQEDMPF +G DI++NP +PSRM IG + E + G+ N G + ATP D +
Sbjct: 1065 RQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIFEAVLGRAGKNLG-VKFATPIFDGATLD 1123
Query: 195 KISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 374
++ G + +G TG + + +G TY +L HMV+DK+H+R+ GP +
Sbjct: 1124 DLNEWTDKAGLPRYCKTYLCDGGTGERFDQPATVGVTYMLKLGHMVEDKMHARSIGPYSL 1183
Query: 375 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+ +QP+ G+A+ GG RFGEME GA+ L+E L SD
Sbjct: 1184 ITQQPLGGKAQFGGQRFGEMEVWALEGFGASHILQEILTIKSD 1226
>UniRef50_Q2S1Q5 Cluster: DNA-directed RNA polymerase subunit beta;
n=18; Bacteroidetes|Rep: DNA-directed RNA polymerase
subunit beta - Salinibacter ruber (strain DSM 13855)
Length = 1287
Score = 120 bits (288), Expect = 5e-26
Identities = 58/161 (36%), Positives = 93/161 (57%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKI 200
EDMPF +G D+++NP +PSRM +G + E + G G + ATP D +++ +
Sbjct: 1084 EDMPFLDDGTPVDLVLNPLGVPSRMNLGQIYETLLGWAGDRLG-VKYATPIFDGASLEDV 1142
Query: 201 SSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILV 380
L+ G G +Y+G TG + + +G Y +L+H+V+DK+H+R+ GP ++
Sbjct: 1143 GDELEKAGLPRDGKVQLYDGRTGEPFDEKTTVGQIYMMKLEHLVEDKMHARSIGPYSLIT 1202
Query: 381 RQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+A+ GG R GEME A+GA+ L+E L SD
Sbjct: 1203 QQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLTFKSD 1243
>UniRef50_Q98Q23 Cluster: DNA-directed RNA polymerase subunit beta;
n=19; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta - Mycoplasma pulmonis
Length = 1216
Score = 120 bits (288), Expect = 5e-26
Identities = 62/161 (38%), Positives = 94/161 (58%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKI 200
EDMP+ +G DII+NP +PSRM IG ++E G + G + +P D V I
Sbjct: 978 EDMPYLEDGTPLDIILNPQGVPSRMNIGQVLELHLGMAAKKLG-VKFVSPVFDGVKKADI 1036
Query: 201 SSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILV 380
L++ G +++ TG KI+ ++ +G Y +L HMVDDK+HSR+ GP ++
Sbjct: 1037 MDALEEAKLPRTGKMKVFDPTTGEKIDNEISVGVMYMFKLSHMVDDKMHSRSIGPYSLIT 1096
Query: 381 RQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G++++GG RFGEME ++GAA L+E L SD
Sbjct: 1097 QQPLGGKSQNGGQRFGEMETWALESYGAANILQEILTYKSD 1137
>UniRef50_A5USR7 Cluster: DNA-directed RNA polymerase; n=5;
Chloroflexi (class)|Rep: DNA-directed RNA polymerase -
Roseiflexus sp. RS-1
Length = 1229
Score = 118 bits (285), Expect = 1e-25
Identities = 65/161 (40%), Positives = 91/161 (56%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKI 200
EDMPF +G DII+NP +PSRM IG ++E G ++ G ATP D +I
Sbjct: 993 EDMPFLPDGTPVDIILNPIGVPSRMNIGQILETHLGWAAARLG-YRVATPVFDGATETEI 1051
Query: 201 SSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILV 380
L+ G +Y+G TG + V +G Y +L H+V+DKIH+R+ GP ++
Sbjct: 1052 KEWLKRADLPPDGKITLYDGRTGEAFDRPVTVGYIYMMKLAHLVEDKIHARSTGPYSLVT 1111
Query: 381 RQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+A+ GG RFGEME A+GAA L+E L SD
Sbjct: 1112 QQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1152
>UniRef50_Q7URW6 Cluster: DNA-directed RNA polymerase subunit beta;
n=5; Planctomycetales|Rep: DNA-directed RNA polymerase
subunit beta - Rhodopirellula baltica
Length = 1240
Score = 117 bits (282), Expect = 3e-25
Identities = 61/161 (37%), Positives = 90/161 (55%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKI 200
EDMPF +G I++NP +PSRM +G ++E G + G TP D + +I
Sbjct: 1033 EDMPFLPDGTPIQIMLNPLGVPSRMNVGQILETHLGWAGAKLG-FQALTPIFDGASESEI 1091
Query: 201 SSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILV 380
+ L + G G + +G TG + + +G Y +L H+VDDK+H+R+ GP ++
Sbjct: 1092 NDCLAEAGLPAHGKIRLTDGRTGEPMEQETTVGYIYMLKLHHLVDDKVHARSTGPYSLIT 1151
Query: 381 RQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+AR GG RFGEME A+GAA L+E L SD
Sbjct: 1152 QQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSD 1192
>UniRef50_Q7RER1 Cluster: DNA-directed RNA polymerase; n=6; Plasmodium
(Vinckeia)|Rep: DNA-directed RNA polymerase - Plasmodium
yoelii yoelii
Length = 1470
Score = 116 bits (279), Expect = 6e-25
Identities = 70/197 (35%), Positives = 97/197 (49%), Gaps = 16/197 (8%)
Frame = +3
Query: 150 EIGDATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHM 329
E D T + + + LL + GY G E++Y+G G + A +F G YYQRL+HM
Sbjct: 1268 ENSDTTEISYDEKIDFFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHM 1327
Query: 330 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPY 509
DK R GPV L QP++G+ + GG+R GEMERD I+HG + + ER SD +
Sbjct: 1328 AYDKAQVRRTGPVCHLTHQPLKGKKKHGGIRLGEMERDGLISHGCSFIINERFLMNSDGH 1387
Query: 510 RIHVCNFCGLIAIANLRNN----------------TFECKGCKNKTQISQIRLPYAAKLL 641
VC CGLI L+ N CK C +I + +PY + L
Sbjct: 1388 ECFVCPKCGLILSPILQYNCSGKLMKGRSIGGNSKMAVCKSCNVSCKI--VYVPYVLRYL 1445
Query: 642 FQELMSMNIAPRLMVVS 692
EL+ +NI RL + S
Sbjct: 1446 LNELVCLNITIRLNIQS 1462
Score = 71.7 bits (168), Expect = 2e-11
Identities = 34/54 (62%), Positives = 39/54 (72%)
Frame = +3
Query: 12 YRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF 173
+ EDMPF+ GI PD+I NPH IPSRMTIG LIE I GK +S G+ DATPF
Sbjct: 1173 FPHEDMPFSESGIVPDVIFNPHGIPSRMTIGMLIESICGKAASIYGKRIDATPF 1226
>UniRef50_Q8F0S2 Cluster: DNA-directed RNA polymerase subunit beta;
n=25; Leptospira|Rep: DNA-directed RNA polymerase subunit
beta - Leptospira interrogans
Length = 1226
Score = 114 bits (275), Expect = 2e-24
Identities = 60/162 (37%), Positives = 90/162 (55%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+EDMP+ +G DI++NP +PSRM +G + E G +S G I TP D
Sbjct: 991 EEDMPYMEDGTPLDIVLNPLGVPSRMNLGQIFETQLGFAASKLG-ISFETPVFDGAEESD 1049
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
+ + ++ L +Y+G TG +VF G Y +L H+V+DKIH+R+ GP ++
Sbjct: 1050 VDNFCKEANLPLNSKFKLYDGRTGLPFMNEVFCGYIYILKLAHLVEDKIHARSTGPYSLV 1109
Query: 378 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+A+ GG R GEME A+GA+ L+E L SD
Sbjct: 1110 TQQPLGGKAQFGGQRLGEMEVWALEAYGASHTLQELLTIKSD 1151
>UniRef50_O78485 Cluster: DNA-directed RNA polymerase subunit beta;
n=5; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta - Guillardia theta (Cryptomonas phi)
Length = 1096
Score = 113 bits (273), Expect = 3e-24
Identities = 64/177 (36%), Positives = 100/177 (56%), Gaps = 15/177 (8%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF-------- 173
++DMP+ +G D+++NP +PSRM +G + EC+ G + N + TPF
Sbjct: 833 RQDMPYLPDGTPVDLVLNPLGVPSRMNVGQIFECLLGLAAENLNKRFKITPFDEMHGAEA 892
Query: 174 -----NDAVNVQKISSLLQDYGYHLR--GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMV 332
N+ +N KI + +++ + LR G +Y+G TG + V +G +Y +L H+V
Sbjct: 893 SRVLVNEKLNEAKIKTG-ENWLFDLRHPGKITLYDGRTGEAFDNPVTIGVSYMLKLVHLV 951
Query: 333 DDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
DDKIH+R+ GP ++ +QP+ GRA+ GG R GEME A GA+ L+E L SD
Sbjct: 952 DDKIHARSTGPYSLVTQQPLGGRAQHGGQRLGEMEVWALEAFGASYTLQELLTVKSD 1008
>UniRef50_Q9Z9A0 Cluster: DNA-directed RNA polymerase subunit beta;
n=13; Chlamydiales|Rep: DNA-directed RNA polymerase
subunit beta - Chlamydia pneumoniae (Chlamydophila
pneumoniae)
Length = 1252
Score = 113 bits (273), Expect = 3e-24
Identities = 59/162 (36%), Positives = 92/162 (56%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+ DMP+ G T +I+NP +PSRM +G ++E G + G I TP + Q+
Sbjct: 1044 EADMPYLSNGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAG-IYVKTPVFEGFPEQR 1102
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
I ++ + G G +Y+G TG + + +V +G Y +L H++ DKIH+R+ GP ++
Sbjct: 1103 IWDMMIEQGLPEDGKSFLYDGKTGERFDNKVVIGYIYMLKLSHLIADKIHARSIGPYSLV 1162
Query: 378 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ G+A+ GG RFGEME A+G A L+E L SD
Sbjct: 1163 TQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILTVKSD 1204
>UniRef50_A5K506 Cluster: DNA-directed RNA polymerase; n=5; cellular
organisms|Rep: DNA-directed RNA polymerase - Plasmodium
vivax
Length = 1562
Score = 112 bits (269), Expect = 1e-23
Identities = 66/192 (34%), Positives = 96/192 (50%), Gaps = 16/192 (8%)
Frame = +3
Query: 189 VQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPV 368
+ + LL + GY G E++Y+G G + A +F G YYQRL+HM DK R GP+
Sbjct: 1373 IDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFFGVIYYQRLRHMAYDKAQVRRTGPI 1432
Query: 369 QILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAI 548
L QP++G+ + GG+R GEMERD I+HG + + ER SD + VC CGLI
Sbjct: 1433 CNLTHQPLKGKKKHGGIRLGEMERDGLISHGCSFIINERFLLNSDGHECFVCPQCGLILS 1492
Query: 549 ANL----------------RNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
+ ++ CK C +I + +PY + L EL+ +N+ RL
Sbjct: 1493 PIMQFTCSGEMVKGRSIGGKSKMAVCKSCGVSCKI--VYVPYVLRYLLNELICLNVTIRL 1550
Query: 681 MVVS*VI*FDKK 716
+ S FD K
Sbjct: 1551 NIKSVESMFDMK 1562
Score = 69.7 bits (163), Expect = 7e-11
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = +3
Query: 12 YRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF 173
+ EDMPF+ GI PD+I NPH IPSRMTIG LIE I GK + G+ DATPF
Sbjct: 1243 FPHEDMPFSESGIVPDVIFNPHGIPSRMTIGMLIESICGKAACIYGKRIDATPF 1296
>UniRef50_A6PR78 Cluster: DNA-directed RNA polymerase, beta subunit;
n=2; Chlamydiae/Verrucomicrobia group|Rep: DNA-directed
RNA polymerase, beta subunit - Victivallis vadensis ATCC
BAA-548
Length = 1274
Score = 111 bits (266), Expect = 2e-23
Identities = 70/183 (38%), Positives = 99/183 (54%), Gaps = 22/183 (12%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKI 200
EDMPF +G DII+NP +PSRM IG ++E G + G ATP D + Q+I
Sbjct: 1043 EDMPFLEDGTPVDIILNPLGVPSRMNIGQVLETHLGWAAKMLG-FKAATPVFDGIGEQEI 1101
Query: 201 SSLLQ------------DYGYHLRGNEV----------MYNGHTGRKINAQVFLGPTYYQ 314
L++ DY + + NE +Y+G TG K + +V +G Y
Sbjct: 1102 IDLMRKGNDAFTAKEGHDYHWGFKQNEAGEWVYDGKADVYDGRTGNKFDQRVMVGQVYML 1161
Query: 315 RLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFE 494
+L H+V +KIH+RA GP ++ +QP+ G+A+ GG RFGEME A+GAA L+E L
Sbjct: 1162 KLDHLVANKIHARAVGPYSLVTQQPLGGKAQHGGQRFGEMEVWALEAYGAAYNLQEMLTV 1221
Query: 495 VSD 503
SD
Sbjct: 1222 KSD 1224
>UniRef50_Q85FR7 Cluster: DNA-directed RNA polymerase subunit beta;
n=1; Cyanidioschyzon merolae|Rep: DNA-directed RNA
polymerase subunit beta - Cyanidioschyzon merolae (Red
alga)
Length = 1036
Score = 109 bits (262), Expect = 7e-23
Identities = 59/162 (36%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQ--K 197
DMP+ +G D+I+NP +PSRM +G L E + G + + PF++ + + +
Sbjct: 816 DMPYLPDGTPVDVILNPLGVPSRMNVGQLFEALLGLAAHRLRKRIKIVPFDEMYHKEASR 875
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
I Q L ++Y+G +G K + V +G Y +L H+VD+KIH+R+ GP ++
Sbjct: 876 IFVHQQLKRAALSAQTILYDGRSGEKFDNAVTVGMAYMLKLVHLVDEKIHARSTGPYSLV 935
Query: 378 VRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+QP+ GRA+ GG R GEME A+GAA L+E L SD
Sbjct: 936 TQQPLGGRAQHGGQRLGEMEVWALEAYGAAYTLQELLTLKSD 977
>UniRef50_A0T0D7 Cluster: DNA-directed RNA polymerase subunit beta;
n=8; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta - Phaeodactylum tricornutum
Length = 1389
Score = 107 bits (257), Expect = 3e-22
Identities = 61/176 (34%), Positives = 96/176 (54%), Gaps = 14/176 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFND--AVNV 191
++DMPF +G DI++NP +PSRM +G L EC+ G PF++ + +
Sbjct: 1131 RQDMPFLPDGTPLDILLNPLGVPSRMNVGQLYECLLGLAGDKLNARFKILPFDEMYGLEI 1190
Query: 192 QKI--------SSLLQDYGY----HLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
+I +S+ ++ + + G V+ +G TG++ V +G Y +L H+VD
Sbjct: 1191 SRILINKKLRQASIAKNESWLFNPYAPGKMVLIDGRTGKEFENPVTVGNAYMLKLIHLVD 1250
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
DK+H+RA GP ++ +QP+ G+A+ GG RFGEME GAA L+E L SD
Sbjct: 1251 DKMHARATGPYSLITQQPLRGKAQHGGQRFGEMEVWALEGFGAAFTLKELLTIKSD 1306
>UniRef50_Q2JJ19 Cluster: DNA-directed RNA polymerase subunit beta;
n=54; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta - Synechococcus sp. (strain JA-2-3B'a(2-13))
(Cyanobacteria bacteriumYellowstone B-Prime)
Length = 1139
Score = 106 bits (255), Expect = 5e-22
Identities = 60/177 (33%), Positives = 97/177 (54%), Gaps = 16/177 (9%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK- 197
EDMP+ +G D+++NP +PSRM +G + EC+ G + + G PF++ ++
Sbjct: 846 EDMPYLADGTPVDVVLNPLGVPSRMNVGQVYECLLGWAAEHLGVRFKLMPFDEMHGLEAS 905
Query: 198 ---ISSLLQ--------DYGYHLRGNEV----MYNGHTGRKINAQVFLGPTYYQRLKHMV 332
+ + L+ D+ ++ G +++G TG + V +G Y +L H+V
Sbjct: 906 RLTVEAKLREAREKTGKDWIFNPEGKYCGKIQVFDGRTGEPFDQPVTVGRAYMLKLVHLV 965
Query: 333 DDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
DDKIH+R+ GP ++ +QP+ G+A+ GG RFGEME A GAA L+E L SD
Sbjct: 966 DDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYILQELLTVKSD 1022
>UniRef50_Q20EX1 Cluster: DNA-directed RNA polymerase subunit beta;
n=1; Oltmannsiellopsis viridis|Rep: DNA-directed RNA
polymerase subunit beta - Oltmannsiellopsis viridis
(Marine flagellate)
Length = 1416
Score = 105 bits (253), Expect = 9e-22
Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
++DMP+ +G D+++NP +PSRM +G + EC+ G G+ PF++ Q
Sbjct: 1181 RQDMPYLPDGTPLDMVLNPLGVPSRMNVGQIYECLLGLAGRYLGQKFKVRPFDEIYGPQT 1240
Query: 198 ISSLLQDYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
SL+ Y R G +++G TG + V +G Y +L H+VD
Sbjct: 1241 SRSLVYSKLYEARLRTGQRWLFNPASPGKTRLFDGRTGECFSQPVTVGQAYMLKLIHLVD 1300
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+KIH+R+ GP ++ +QP+ GR++ GG R GEME GAA L+E L SD
Sbjct: 1301 EKIHARSIGPYSLVTQQPLRGRSKHGGQRLGEMEVWALEGFGAAYTLQELLTVKSD 1356
>UniRef50_Q3ZJ93 Cluster: DNA-directed RNA polymerase subunit beta;
n=20; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta - Pseudendoclonium akinetum (Green alga)
Length = 2178
Score = 105 bits (252), Expect = 1e-21
Identities = 59/176 (33%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
++DMP+ +G DI++NP +PSRM +G ++EC+ G + PF++ +
Sbjct: 1943 RQDMPYLSDGTPLDIVLNPLGVPSRMNVGQILECLLGMAGYYLKQNFKIQPFDEIYGCEA 2002
Query: 198 ISSLLQDYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
SL+ Y R G +++G TG V +G Y +L H+VD
Sbjct: 2003 SRSLVYSKLYEARIKTGQDWLFNANHPGKTRLFDGRTGDCFKQPVTVGVAYILKLIHLVD 2062
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
DKIH+R+ GP ++ +QP+ GR++ GG R GEME GAA L+E L SD
Sbjct: 2063 DKIHARSTGPYSLVTQQPLRGRSKQGGQRVGEMEVWALEGFGAAYILQEILTIKSD 2118
>UniRef50_Q0P3M6 Cluster: DNA-directed RNA polymerase subunit beta;
n=2; Viridiplantae|Rep: DNA-directed RNA polymerase
subunit beta - Ostreococcus tauri
Length = 1088
Score = 103 bits (248), Expect = 4e-21
Identities = 57/174 (32%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKIS 203
DMP+ G D+++NP +PSRM +G + EC+ G ++ + PF++ +
Sbjct: 867 DMPYLQSGKALDMVLNPLGVPSRMNVGQIFECLLGLAANTLKQNFKVLPFDEMHGAEVSR 926
Query: 204 SLLQDYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
+ Y Y R G ++++G TG + V +G Y +L H+VDDK
Sbjct: 927 GFVYHYLYKSRLLTQQKWLFKPNSPGKSIVFDGRTGLNFDQPVTVGYPYILKLVHLVDDK 986
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
IH+R+ GP ++ +QP+ GR++ GG R GEME GAA L+E L SD
Sbjct: 987 IHARSTGPYSLVTQQPLGGRSKKGGQRLGEMEVWALEGFGAAYVLQELLTIKSD 1040
>UniRef50_Q8HTL7 Cluster: DNA-directed RNA polymerase subunit beta
C-terminal section; n=2; Chlorophyceae|Rep: DNA-directed
RNA polymerase subunit beta C-terminal section -
Chlamydomonas reinhardtii
Length = 626
Score = 103 bits (247), Expect = 5e-21
Identities = 59/176 (33%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
++DMPF +G DI++NP +PSRM +G + EC+ G GE PF++
Sbjct: 348 RQDMPFLPDGAAVDIVLNPLGVPSRMNVGQIYECLLGLAGRYLGEHYKIPPFDEMYGADA 407
Query: 198 ISSLLQDYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
S + Y R G +++G + V +G Y +L HMVD
Sbjct: 408 SRSFVLSKLYEARKKTGLKWLLDPNHPGKIRLFDGRNSECFDQTVTVGIAYVLKLVHMVD 467
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
DK+H+R+ GP ++ +QP+ GR++ GG R GEME +GAA L E L SD
Sbjct: 468 DKMHARSTGPYSLVTQQPLRGRSKQGGQRLGEMEVWAIEGYGAAFVLSEMLTIKSD 523
>UniRef50_P56299 Cluster: DNA-directed RNA polymerase subunit beta;
n=1; Chlorella vulgaris|Rep: DNA-directed RNA polymerase
subunit beta - Chlorella vulgaris (Green alga)
Length = 1301
Score = 103 bits (246), Expect = 6e-21
Identities = 60/176 (34%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
++DMP+ +G DI++NP +PSRM +G ++EC+ G E F++ +
Sbjct: 1054 RQDMPYLPDGTPVDIVLNPLGVPSRMNVGQILECLLGLAGHFLHERYTTYLFDEQYGAEA 1113
Query: 198 ISSLLQDYGY--------------HLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
SL+ Y H G +++G TG + + G Y +L H+VD
Sbjct: 1114 SRSLVYSKLYQASLKTRNPWVFEPHHPGKIRVFDGRTGLTFDQPITAGYAYILKLVHLVD 1173
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
DKIH+R GP + +QP++GRAR+GG R GEME A+GAA L E SD
Sbjct: 1174 DKIHARPTGPYSAITQQPVKGRARNGGQRLGEMEVWALQAYGAAHTLHEFFTVKSD 1229
>UniRef50_Q9TL06 Cluster: DNA-directed RNA polymerase subunit beta;
n=1; Nephroselmis olivacea|Rep: DNA-directed RNA
polymerase subunit beta - Nephroselmis olivacea
Length = 1109
Score = 101 bits (243), Expect = 1e-20
Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQ- 194
++DMP+ +G D+++NP +PSRM +G + EC+ G G+ F++ +
Sbjct: 872 RQDMPYLQDGTPVDMVLNPLGVPSRMNVGQVFECLLGLAGQRLGQQLKVRAFDEMYGAEA 931
Query: 195 -------KISSLLQDYGYHLR------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
K+ + G+H G + +G TG + V +G Y +L H VD
Sbjct: 932 SRHLVYNKLHEASEVTGHHWLFDPNHPGKSRLIDGRTGDMFDQAVTIGQAYMLKLIHQVD 991
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
DKIH+RA GP ++ +QP+ GR++ GG R GEME GAA L+E L SD
Sbjct: 992 DKIHARATGPYSLITQQPLGGRSKRGGQRLGEMEVWAFEGFGAAYTLQELLTVKSD 1047
>UniRef50_A4M8H6 Cluster: DNA-directed RNA polymerase, beta subunit;
n=3; Thermotogaceae|Rep: DNA-directed RNA polymerase,
beta subunit - Petrotoga mobilis SJ95
Length = 1187
Score = 101 bits (241), Expect = 2e-20
Identities = 61/173 (35%), Positives = 93/173 (53%), Gaps = 11/173 (6%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVN--- 188
+EDMPF +G ++++P +PSRM IG ++E G +S + ATP D
Sbjct: 960 KEDMPFLPDGTPLQMLLSPLGVPSRMNIGQVLELHLGWLSMLTNDYY-ATPIFDGATESE 1018
Query: 189 -VQKISSLLQDYGYHL-------RGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKI 344
+ ++S + +++ +L G V+ +G TG + V +G Y +L H+ DKI
Sbjct: 1019 IMDELSKVREEHELYLGDDPDQPNGKIVLRDGRTGEPFDFPVAVGSMYMLKLSHIAKDKI 1078
Query: 345 HSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
H+R+ GP ++ +QP+ G+A GG RFGEME AHGAA L E L SD
Sbjct: 1079 HARSTGPYSLIHQQPLGGKAHFGGQRFGEMEVWALEAHGAAHTLNEMLTYKSD 1131
>UniRef50_A6YGE0 Cluster: DNA-directed RNA polymerase; n=1; Leptosira
terrestris|Rep: DNA-directed RNA polymerase - Leptosira
terrestris (Pleurastrum terrestre)
Length = 880
Score = 98.7 bits (235), Expect = 1e-19
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
++DMP+ +G D+++NP +PSRM +G + E + G + TPF++ +
Sbjct: 649 KQDMPYLPDGTPVDMVLNPLGVPSRMNVGQVFETLLGLAGKYLHQHFKVTPFDEVYGPEA 708
Query: 198 ISSLLQDYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
SL+ Y R G +++G TG + V G Y +L H+VD
Sbjct: 709 SRSLVYSKLYEARLKTDQNWIFDPKSPGKTRIFDGQTGANFDQAVTAGYAYMLKLIHLVD 768
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
KIH+R+ GP ++ +QP+ GR+R GG R GEME A GA+ L+E + SD
Sbjct: 769 HKIHARSTGPYALVTQQPVRGRSRAGGQRLGEMEFWALEAFGASYNLQEMMTIKSD 824
>UniRef50_Q7YN57 Cluster: DNA-directed RNA polymerase subunit beta;
n=1; Eimeria tenella|Rep: DNA-directed RNA polymerase
subunit beta - Eimeria tenella
Length = 1059
Score = 98.3 bits (234), Expect = 2e-19
Identities = 66/174 (37%), Positives = 91/174 (52%), Gaps = 14/174 (8%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIE--------------CIQGKVSSNKGEIGD 161
D+P+T GI PDII + IPSRM IG L E CI + K I
Sbjct: 826 DLPYTNTGIIPDIISDSLGIPSRMNIGQLFENLFGLSCYFLNKRLCISNTFNLPKVYI-K 884
Query: 162 ATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
+N N+++ S L Y + G ++ +G G K++ FLG + Y +L HM+ DK
Sbjct: 885 TILYNYINNIKEKSGNLWIYNSYSPGKILLRDGRQGYKLSEPSFLGISKYSKLIHMIKDK 944
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
IH R GP L++QP++GR + GG RFGEME A+G++ LRE L SD
Sbjct: 945 IHYRTIGPYTELMQQPVKGRNKKGGQRFGEMEIWAIEAYGSSYNLRELLNYKSD 998
>UniRef50_Q11HB3 Cluster: DNA-directed RNA polymerase subunit beta;
n=740; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Mesorhizobium sp. (strain BNC1)
Length = 1379
Score = 95.9 bits (228), Expect = 9e-19
Identities = 47/114 (41%), Positives = 71/114 (62%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
ATP D + I+ +L++ G + G +Y+G TG + + +V +G Y +L H+VDDK
Sbjct: 1205 ATPVFDGAHESDINEMLEEAGLNSSGQVTLYDGRTGEEFDRKVTVGYIYMLKLHHLVDDK 1264
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
IH+R+ GP ++ +QP+ G+A+ GG RFGEME A+GAA L+E L SD
Sbjct: 1265 IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1318
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKG-EIGD-ATPFNDAVNVQ 194
EDMPF +G DI++NP +PSRM +G ++E G + G +IG+ + +A +++
Sbjct: 1105 EDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLGWACAGMGRQIGELIDAYKEAGDIK 1164
Query: 195 ----KISSLLQD 218
KI SL+ D
Sbjct: 1165 PLRAKIESLIPD 1176
>UniRef50_P29398 Cluster: DNA-directed RNA polymerase subunit beta;
n=2; Thermotoga|Rep: DNA-directed RNA polymerase subunit
beta - Thermotoga maritima
Length = 1263
Score = 94.3 bits (224), Expect = 3e-18
Identities = 58/172 (33%), Positives = 89/172 (51%), Gaps = 10/172 (5%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+EDMPF +G +++NP IPSRM +G ++E G ++ G+ F A +
Sbjct: 1036 KEDMPFLPDGTPVQMVLNPLGIPSRMNVGQILETHLGWLAKLTGKWFATPVFEGAKEDEI 1095
Query: 198 ISSLLQDY---GYHL-------RGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIH 347
+ L ++ G HL G V+ +G TG + V +G Y +L H+ +KIH
Sbjct: 1096 LRPLYEERKKRGLHLGDDENNPNGKVVLRDGRTGEPFDNPVVVGYMYMLKLIHIAKEKIH 1155
Query: 348 SRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+R+ GP ++ +QP+ G++ GG R GEME A+GAA L E L SD
Sbjct: 1156 ARSTGPYSLIHQQPLGGKSHFGGQRLGEMEVWALEAYGAAHTLAEMLTIKSD 1207
>UniRef50_A2T324 Cluster: DNA-directed RNA polymerase subunit beta;
n=4; Embryophyta|Rep: DNA-directed RNA polymerase subunit
beta - Angiopteris evecta (Mule's foot fern) (Giant fern)
Length = 1070
Score = 93.9 bits (223), Expect = 4e-18
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 14/176 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
++DMP+ +G D+I++P +PSRM +G + EC+ G + TPF++ +
Sbjct: 836 RQDMPYLQDGTPVDMILSPLGVPSRMNVGQIFECLLGLAGDILKKHYRITPFDERYEREA 895
Query: 198 ----ISSLLQDYGYHLR----------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
+ S L + G + +G TG V +G Y +L H VD
Sbjct: 896 SRKLVFSELHEASQEAAIPWLFEPDHPGKSRLIDGRTGDIFEQPVTIGKAYMMKLIHQVD 955
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
DKIH+R+ GP ++ +QP+ GR+R GG R GEME G + L+E L SD
Sbjct: 956 DKIHARSSGPYALVTQQPLRGRSRGGGQRVGEMEVWALEGFGVSYILQEMLTIKSD 1011
>UniRef50_A2YRP1 Cluster: DNA-directed RNA polymerase; n=39;
Magnoliophyta|Rep: DNA-directed RNA polymerase - Oryza
sativa subsp. indica (Rice)
Length = 1347
Score = 93.5 bits (222), Expect = 5e-18
Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 11/109 (10%)
Frame = +3
Query: 375 LVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAI-- 548
L RQP+E R R GG++FGEMERDC +AHGAA L ERLF +SD R+HVC C A+
Sbjct: 1230 LTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVV 1289
Query: 549 ---------ANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNI 668
+ C+ C++ ++ ++ +PY AK+L+QEL SM I
Sbjct: 1290 SPAVAADGGCGRKVRGPYCRFCRSAEEVVRVSVPYGAKILYQELFSMGI 1338
Score = 58.8 bits (136), Expect = 1e-07
Identities = 30/67 (44%), Positives = 41/67 (61%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
QE+ PFT +GI PDI+INPH P+R T G L+E GK + G ATPF + +V+
Sbjct: 1085 QENFPFTHQGIVPDIVINPHGFPTRQTPGQLLEAALGKGIALGGATRYATPFT-SPSVEV 1143
Query: 198 ISSLLQD 218
I+ L +
Sbjct: 1144 ITEQLHN 1150
>UniRef50_Q9MTD3 Cluster: DNA-directed RNA polymerase subunit beta;
n=9; Sarcocystidae|Rep: DNA-directed RNA polymerase
subunit beta - Toxoplasma gondii
Length = 1051
Score = 93.1 bits (221), Expect = 7e-18
Identities = 63/175 (36%), Positives = 91/175 (52%), Gaps = 15/175 (8%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVS-SNKGEI--GDATPFNDAVNVQ 194
D+PF PDII+ IPSRM +G L E + GK+S S I T N N
Sbjct: 815 DLPFLQNSFYPDIIVGALGIPSRMNLGQLFEALVGKISFSYNIRILPSFTTSSNLYFNYL 874
Query: 195 KI---SSLLQD---------YGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDD 338
KI + L+ + Y ++L G ++ +G TG K+ + V G + Y +L H++ D
Sbjct: 875 KILIYNFLMFNNFKKGFNWLYNFNLPGKFIIRDGRTGVKLKSSVLCGVSRYSKLIHLIKD 934
Query: 339 KIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
K+H R GP +++QP++G+ GG RFGEME A GA+ L+E L SD
Sbjct: 935 KLHFRTTGPYTEILQQPLKGKKNLGGQRFGEMEIWALEAFGASYNLKEILNYKSD 989
>UniRef50_O67762 Cluster: DNA-directed RNA polymerase subunit beta;
n=3; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Aquifex aeolicus
Length = 1468
Score = 92.3 bits (219), Expect = 1e-17
Identities = 49/114 (42%), Positives = 65/114 (57%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
ATP + I LL+ G G +Y+G TG + +V +G + +L HMVDDK
Sbjct: 1293 ATPAFEGAEEDAIKELLKKAGLPENGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVDDK 1352
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
IH+RA GP ++ +QP+ GRA+ GG R GEME AHGAA L+E L SD
Sbjct: 1353 IHARATGPYSLVTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSD 1406
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKG-EIGD 161
EDMPF +G DI++NP +PSRM +G ++E G + G +IG+
Sbjct: 1187 EDMPFLPDGTPVDIVLNPLGVPSRMNVGQILETHLGWAAKELGKKIGE 1234
>UniRef50_Q5FTX7 Cluster: DNA-directed RNA polymerase subunit beta;
n=125; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 1390
Score = 91.5 bits (217), Expect = 2e-17
Identities = 46/114 (40%), Positives = 66/114 (57%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
ATP D ++ I +L+ G + G + +G TG Q +G Y +L H+VDDK
Sbjct: 1229 ATPVFDGASIPDIEEMLEKAGVNKSGQSQLIDGRTGEPFERQTTVGYIYMLKLHHLVDDK 1288
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
IH+R+ GP ++ +QP+ G+A+ GG RFGEME A+GAA L+E L SD
Sbjct: 1289 IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1342
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKG-EIGD 161
EDMPF G DI++NP +PSRM IG ++E G +N G IGD
Sbjct: 1128 EDMPFLENGQAVDIVLNPLGVPSRMNIGQILETHLGWACANIGASIGD 1175
>UniRef50_P23579 Cluster: DNA-directed RNA polymerase subunit beta;
n=2; Euglena|Rep: DNA-directed RNA polymerase subunit
beta - Euglena gracilis
Length = 1082
Score = 91.5 bits (217), Expect = 2e-17
Identities = 59/174 (33%), Positives = 85/174 (48%), Gaps = 14/174 (8%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKIS 203
DMPF +G D+I+NP IPSRM +G + E + S E PF++
Sbjct: 857 DMPFLPDGTPVDMILNPLGIPSRMNVGQVFESLLNLSSLFLKERYKIQPFDEVQTSMNSK 916
Query: 204 SLL------------QDYGYHLR--GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
S + +D+ ++ G +Y+G R + V G Y +L HMV DK
Sbjct: 917 SFVYKKLNEARKRTKKDWLFNPNYPGKAFLYDGRNCRPFDHPVAFGYAYILKLIHMVKDK 976
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
IH+R GP + +QP+ G++++GG RFGEME GAA L+E L SD
Sbjct: 977 IHARVTGPYSSVTQQPLRGKSKNGGQRFGEMEVWAIEGFGAAYLLQELLTIKSD 1030
>UniRef50_A7BQQ8 Cluster: DNA-directed RNA polymerase, beta subunit;
n=1; Beggiatoa sp. PS|Rep: DNA-directed RNA polymerase,
beta subunit - Beggiatoa sp. PS
Length = 1118
Score = 91.1 bits (216), Expect = 3e-17
Identities = 50/147 (34%), Positives = 81/147 (55%)
Frame = +3
Query: 63 IINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQDYGYHLRGN 242
I N P +T+ + E ++ + + G + AT D + +I +L+ G G
Sbjct: 926 IYNVSGKPEDLTVLNNAEILELAKNLSDG-VPMATQVFDGASESEIKMMLELAGLPTNGQ 984
Query: 243 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 422
+Y+G TG + Q+ +G Y +L H+VDDK+H+R+ GP ++ +QP+ G+A+ GG R
Sbjct: 985 TTLYDGRTGEAFSRQITVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQR 1044
Query: 423 FGEMERDCQIAHGAAQFLRERLFEVSD 503
FGEME A+GA+ L+E L SD
Sbjct: 1045 FGEMEVWALEAYGASYTLQEMLTVKSD 1071
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGE 152
EDMP+T +G D+++NP +PSRM IG ++E G + GE
Sbjct: 854 EDMPYTKDGRPVDLVLNPLGVPSRMNIGQVLETHLGWAAKALGE 897
>UniRef50_Q0SFB3 Cluster: DNA-directed RNA polymerase subunit beta;
n=318; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Rhodococcus sp. (strain RHA1)
Length = 1168
Score = 91.1 bits (216), Expect = 3e-17
Identities = 70/197 (35%), Positives = 94/197 (47%), Gaps = 35/197 (17%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQ---GKVSSNKGEIGD--------- 161
QEDMPF +G DII+N H +P RM IG ++E GK N GD
Sbjct: 888 QEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIGKTGWNVQIAGDGSRPDWAEQ 947
Query: 162 --------------ATPFNDAVNVQKISSLLQDYGYHLRGNEVM---------YNGHTGR 272
ATP D +++ LL R EVM ++G +G
Sbjct: 948 LPEEMLSAPADSNIATPVFDGAKEDELTGLLGS-TLPNRDGEVMVASDGKATLFDGRSGE 1006
Query: 273 KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI 452
V +G Y +L H+VDDKIH+R+ GP ++ +QP+ G+A+ GG RFGEME
Sbjct: 1007 PFPYPVSVGYMYIIKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQ 1066
Query: 453 AHGAAQFLRERLFEVSD 503
A+GAA L+E L SD
Sbjct: 1067 AYGAAYTLQELLTIKSD 1083
>UniRef50_A1E9I1 Cluster: DNA-directed RNA polymerase subunit beta;
n=75; Eukaryota|Rep: DNA-directed RNA polymerase subunit
beta - Hordeum vulgare (Barley)
Length = 1076
Score = 91.1 bits (216), Expect = 3e-17
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
++DMP+ +G D++ NP +PSRM +G + E G + PF++ +
Sbjct: 842 RQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEA 901
Query: 198 ISSLLQDYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
L+ Y G +++G TG V +G +Y +L H VD
Sbjct: 902 SRKLVFSELYEASKETKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVD 961
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+KIH R+ GP ++ +QP+ GRA+ GG R GEME G A L+E L SD
Sbjct: 962 EKIHGRSTGPYSLVTQQPVRGRAKQGGQRVGEMEVWALEGFGVAHILQEILTYKSD 1017
>UniRef50_Q9PQV6 Cluster: DNA-directed RNA polymerase subunit beta;
n=3; Ureaplasma|Rep: DNA-directed RNA polymerase subunit
beta - Ureaplasma parvum (Ureaplasma urealyticum biotype
1)
Length = 1434
Score = 90.6 bits (215), Expect = 4e-17
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGYHL---RGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMV 332
+TP D N I S++ + + +G +V+Y+G TG + + +G TY +L HMV
Sbjct: 1216 STPVFDGANHDDIVSIMNEANIDIENNKGKQVLYDGRTGEPFDGLISVGLTYMLKLDHMV 1275
Query: 333 DDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
DDKIHSR+ GP + +QP+ G++++GG RFGEME A+GAA L E L SD
Sbjct: 1276 DDKIHSRSVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLLEILTIKSD 1332
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGE 152
+DMPF +G DI++NP +PSRM IG ++E G ++ G+
Sbjct: 1100 QDMPFLKDGTPLDIMLNPLGVPSRMNIGQILELHLGYAAAEIGK 1143
>UniRef50_A1ALT4 Cluster: DNA-directed RNA polymerase subunit beta;
n=32; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Pelobacter propionicus (strain DSM 2379)
Length = 1499
Score = 90.2 bits (214), Expect = 5e-17
Identities = 45/114 (39%), Positives = 68/114 (59%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
A+P + + KI S+L G+H G +++G +G +V +G Y +L H+VDDK
Sbjct: 1337 ASPVFEGASEDKIKSMLGKAGFHSSGQVTLFDGRSGDPFKHKVTVGVMYVLKLHHLVDDK 1396
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
IH+R+ GP ++ +QP+ G+A+ GG R GEME A+GAA L+E L SD
Sbjct: 1397 IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSD 1450
Score = 39.9 bits (89), Expect = 0.065
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKG 149
+EDMP+ +G +I++NP +PSRM +G ++E G + G
Sbjct: 1239 EEDMPYMEDGRPVEIVLNPLGVPSRMNVGQILETHLGWAAKGIG 1282
>UniRef50_Q8G514 Cluster: DNA-directed RNA polymerase subunit beta;
n=372; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Bifidobacterium longum
Length = 1187
Score = 90.2 bits (214), Expect = 5e-17
Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 33/195 (16%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIG-----HL---------------IECIQGKVS 137
+EDMPF +G DI++NP +PSRM +G HL +E K+
Sbjct: 902 EEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHSGWDISLDPNLEAEWKKLI 961
Query: 138 SNKGEIGD-----ATPFNDAVNVQKISSLLQDY-----GYHLRGNE---VMYNGHTGRKI 278
+ E + ATP D V + + LL G L G + +++G TG
Sbjct: 962 PSGAEKAEPNTPVATPVFDGVKPEVLKGLLSTTLPNRDGDRLVGPDGKATLFDGRTGEPY 1021
Query: 279 NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAH 458
+ +G Y +L H+VDDKIH+R+ GP ++ +QP+ G+A+ GG RFGEME A+
Sbjct: 1022 TKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAY 1081
Query: 459 GAAQFLRERLFEVSD 503
GAA L E + SD
Sbjct: 1082 GAAYTLHEMMTTKSD 1096
>UniRef50_A6BM50 Cluster: DNA-directed RNA polymerase subunit beta;
n=4; Embryophyta|Rep: DNA-directed RNA polymerase subunit
beta - Gnetum parvifolium
Length = 1108
Score = 89.8 bits (213), Expect = 6e-17
Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 14/179 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
++DMPF GI+ D+++NP ++PSRM +G + EC+ G ++ + PF++ +
Sbjct: 875 RQDMPFLQSGISLDMVLNPLSVPSRMNVGQIFECLLG-LAGTMNKHYRIPPFDERYEQEA 933
Query: 198 ISSLL------------QDYGYHLR--GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
L+ + + L G +++G TG V G Y +L H V+
Sbjct: 934 SRKLVFYELYKASEQTANPWIFELEHLGKTQIFDGRTGEIFEQPVTTGNAYILKLIHQVN 993
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYR 512
DK+H+R+ G + +QP++G+++ GG R GEME + G A LRE L +D R
Sbjct: 994 DKMHARSTGNYARITQQPVQGKSKGGGQRLGEMEVWALESFGVAYVLREMLTVKADHIR 1052
>UniRef50_UPI00015BD08F Cluster: UPI00015BD08F related cluster; n=1;
unknown|Rep: UPI00015BD08F UniRef100 entry - unknown
Length = 1470
Score = 89.0 bits (211), Expect = 1e-16
Identities = 47/114 (41%), Positives = 68/114 (59%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
ATP + + + +LL++ G G V+Y+G TG + +V G + +L HMV+DK
Sbjct: 1294 ATPAFEGCSEDDLKTLLKEAGLPEDGKFVLYDGRTGEPFDFRVTTGYMHMLKLIHMVEDK 1353
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
IH+R+ GP ++ +QP+ GRA+ GG R GEME AHGAA L+E L SD
Sbjct: 1354 IHARSTGPYSLVTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEMLTVKSD 1407
Score = 44.4 bits (100), Expect = 0.003
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGE 152
EDMPF +G D+++NP +PSRM +G ++E G S G+
Sbjct: 1188 EDMPFLPDGTPVDVVLNPLGVPSRMNVGQILETHLGMASKYIGK 1231
>UniRef50_Q06J17 Cluster: DNA-directed RNA polymerase subunit beta;
n=1; Bigelowiella natans|Rep: DNA-directed RNA polymerase
subunit beta - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 1099
Score = 89.0 bits (211), Expect = 1e-16
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 14/175 (8%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKI 200
++MP+ +GI DI++NP +PSRM IG ++EC+ G PF+++ +
Sbjct: 881 QEMPYLNDGIPLDILLNPLGVPSRMNIGQVLECLLGLSCFYLQRRFKVIPFDESFGFEVS 940
Query: 201 SSLLQDYGY--------------HLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDD 338
+ + Y + G +++ ++G + + +G Y +L H+V++
Sbjct: 941 RNFIYSNLYFSNIKTGNNWLLHPYYPGKNRIFDSYSGLPFDQPITIGKAYILKLIHLVEE 1000
Query: 339 KIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
K+H+R+ G ++ +QP++G+++ GG R GEME +GAA L E L SD
Sbjct: 1001 KVHARSTGSYSLVTQQPLKGKSKKGGQRVGEMEVWALEGYGAAYTLHEILTVKSD 1055
>UniRef50_Q1IHH4 Cluster: DNA-directed RNA polymerase subunit beta;
n=6; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta - Acidobacteria bacterium (strain Ellin345)
Length = 1489
Score = 89.0 bits (211), Expect = 1e-16
Identities = 46/109 (42%), Positives = 63/109 (57%)
Frame = +3
Query: 177 DAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 356
D +I SLL G G +Y+G TG + V +G Y +L H+VDDKIH+R+
Sbjct: 1323 DGSTEAEIKSLLDQAGLPTSGKTFLYDGMTGDRFEQPVTVGYIYMLKLSHLVDDKIHARS 1382
Query: 357 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
GP ++ +QP+ G+A+ GG RFGEME A+GAA L+E L SD
Sbjct: 1383 IGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSD 1431
Score = 40.7 bits (91), Expect = 0.037
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGE 152
+EDMP+ +G +I++NP +PSRM +G ++E G G+
Sbjct: 1220 EEDMPYLEDGTPVEIVLNPLGVPSRMNVGQILETHLGWAGHELGK 1264
>UniRef50_Q9F4A7 Cluster: DNA-directed RNA polymerase; n=10;
Bacteria|Rep: DNA-directed RNA polymerase - Clostridium
botulinum
Length = 961
Score = 87.8 bits (208), Expect = 2e-16
Identities = 47/120 (39%), Positives = 66/120 (55%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+EDMPF +G I +NP +PSRM IG ++E G +S G ATP D
Sbjct: 842 EEDMPFLPDGRPLQICLNPLGVPSRMNIGQVLEVHLGLAASKLGW-HIATPVFDGAIESD 900
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 377
I L+ GY G V+Y+G TG + +V +G Y +L H+VDDKIH+R+ GP ++
Sbjct: 901 IVDCLRKAGYSEDGKTVLYDGRTGEPFDNRVTVGYMYILKLAHLVDDKIHARSTGPYSLV 960
>UniRef50_Q4FQH3 Cluster: DNA-directed RNA polymerase subunit beta;
n=315; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Psychrobacter arcticum
Length = 1372
Score = 86.6 bits (205), Expect = 6e-16
Identities = 42/109 (38%), Positives = 65/109 (59%)
Frame = +3
Query: 177 DAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 356
D ++ LL+ G G + +Y+G TG+K + +V +G Y +L H+VDDK+H+R+
Sbjct: 1217 DGAKESQVKDLLELAGMDRDGQQTLYDGRTGQKFDRKVTVGYMYMLKLNHLVDDKMHARS 1276
Query: 357 RGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
G ++ +QP+ G+A+ GG RFGEME A+GA L+E L SD
Sbjct: 1277 TGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGATYTLQEMLTVKSD 1325
Score = 45.6 bits (103), Expect = 0.001
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGE 152
EDMP+ G T DI++NP +PSRM IG ++E G + GE
Sbjct: 1114 EDMPYDEHGNTVDIVLNPLGVPSRMNIGQVLETHLGMAAKGLGE 1157
>UniRef50_Q9RVV9 Cluster: DNA-directed RNA polymerase subunit beta;
n=3; Deinococcus|Rep: DNA-directed RNA polymerase subunit
beta - Deinococcus radiodurans
Length = 1159
Score = 86.6 bits (205), Expect = 6e-16
Identities = 40/89 (44%), Positives = 58/89 (65%)
Frame = +3
Query: 237 GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 416
G ++Y+G TG I+ V +G Y +L HMV+DK+H+R+ GP ++ +QP+ G+A+ GG
Sbjct: 1010 GKSILYDGRTGEPISGPVVVGIMYVMKLYHMVEDKLHARSTGPYSLITQQPLGGKAQFGG 1069
Query: 417 LRFGEMERDCQIAHGAAQFLRERLFEVSD 503
RFGEME A+GAA L+E L SD
Sbjct: 1070 QRFGEMEVWALEAYGAAHVLQEMLTIKSD 1098
Score = 50.0 bits (114), Expect = 6e-05
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +3
Query: 15 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQ 194
R EDMP+ +G DI+ NP +PSRM +G ++E G+V+ G+ + TP D+V
Sbjct: 893 RPEDMPYLEDGTPVDIVFNPLGVPSRMNLGQILETHLGEVARLTGQKFE-TPVFDSVTEA 951
Query: 195 KISSLLQ 215
I +L+
Sbjct: 952 TIKEMLE 958
>UniRef50_P78013 Cluster: DNA-directed RNA polymerase subunit beta;
n=11; Mycoplasma|Rep: DNA-directed RNA polymerase subunit
beta - Mycoplasma pneumoniae
Length = 1391
Score = 86.2 bits (204), Expect = 8e-16
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGY---HLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMV 332
ATP VN Q + ++ + G G + +G TG + LG Y +L HMV
Sbjct: 1196 ATPIFQGVNFQDLQDIMDEAGLKPAETHGKFKLIDGRTGLPFEKPISLGIMYIMKLNHMV 1255
Query: 333 DDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
DDKIH+RA GP + +QP+ G++++GG RFGEME A+GAA L+E L SD
Sbjct: 1256 DDKIHARAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAYNLQELLTIKSD 1312
Score = 38.3 bits (85), Expect = 0.20
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSN 143
DMP +G DI++NP +PSRM IG + E G + N
Sbjct: 1077 DMPHLEDGTPVDILLNPLGVPSRMNIGQIFEMHLGYAAHN 1116
>UniRef50_P50546 Cluster: DNA-directed RNA polymerase subunit beta;
n=177; Spermatophyta|Rep: DNA-directed RNA polymerase
subunit beta - Arabidopsis thaliana (Mouse-ear cress)
Length = 1072
Score = 86.2 bits (204), Expect = 8e-16
Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
++DMP+ +G D++ NP +PSRM +G + EC G S PF++ +
Sbjct: 838 RQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSLGLAGSLLDRHYRIAPFDERYEQEA 897
Query: 198 ISSLLQDYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
L+ Y G +++G TG V +G Y +L H VD
Sbjct: 898 SRKLVFSELYEASKQTANPWVFEPEYPGKTRIFDGRTGDPFEQPVIIGKPYILKLIHQVD 957
Query: 336 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYR 512
IH R+ G ++ +QP+ GR++ GG R GEME G A L+E L SD R
Sbjct: 958 VIIHGRSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIR 1016
>UniRef50_Q8KTP8 Cluster: DNA-directed RNA polymerase; n=1; Candidatus
Tremblaya princeps|Rep: DNA-directed RNA polymerase -
Tremblaya princeps
Length = 1290
Score = 85.8 bits (203), Expect = 1e-15
Identities = 41/95 (43%), Positives = 58/95 (61%)
Frame = +3
Query: 219 YGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEG 398
+G H R ++Y+G TG + + V +G YY +L H+ +K+HSR+ GP ++ QP+ G
Sbjct: 1148 HGLHRRHQAILYDGRTGTQYDRPVTVGFMYYLKLNHLARNKVHSRSTGPYSLVTEQPLGG 1207
Query: 399 RARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+AR GG R GEME AHGAA L+E L SD
Sbjct: 1208 KARSGGQRVGEMEVWALEAHGAAFTLQEMLTIKSD 1242
Score = 42.3 bits (95), Expect = 0.012
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVS 137
EDMP+ G + D+I+NP +PSRM +G L+E G S
Sbjct: 1028 EDMPYMKNGRSVDVIVNPLGVPSRMNVGQLLETHIGLAS 1066
>UniRef50_Q7VJ82 Cluster: Bifunctional DNA-directed RNA polymerase
subunit beta-beta' (EC 2.7.7.6) [Includes: DNA-directed
RNA polymerase subunit beta (Transcriptase subunit beta)
(RNA polymerase subunit beta); DNA- directed RNA
polymerase subunit beta' (Transcriptase subunit beta')
(RNA polymerase beta')]; n=246; cellular organisms|Rep:
Bifunctional DNA-directed RNA polymerase subunit
beta-beta' (EC 2.7.7.6) [Includes: DNA-directed RNA
polymerase subunit beta (Transcriptase subunit beta) (RNA
polymerase subunit beta); DNA- directed RNA polymerase
subunit beta' (Transcriptase subunit beta') (RNA
polymerase beta')] - Helicobacter hepaticus
Length = 2894
Score = 85.4 bits (202), Expect = 1e-15
Identities = 43/114 (37%), Positives = 65/114 (57%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
A P + + +K L + G +Y+G TG K+ +V +G Y +L H+VD+K
Sbjct: 1216 AIPVFEGIEQEKFDKLFSLVKVDMDGKTELYDGKTGEKMRERVNVGYMYMLKLHHLVDEK 1275
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
+H+R+ GP ++ +QP+ G+A GG RFGEME A+GAA L+E L SD
Sbjct: 1276 VHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTIKSD 1329
Score = 46.0 bits (104), Expect = 0.001
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGE 152
DMP+T +G DI++NP +PSRM IG ++E G V G+
Sbjct: 1113 DMPYTADGEPVDIVLNPLGVPSRMNIGQILEVHLGLVGKRLGQ 1155
>UniRef50_Q9AIU3 Cluster: DNA-directed RNA polymerase subunit beta;
n=106; cellular organisms|Rep: DNA-directed RNA
polymerase subunit beta - Anaplasma phagocytophilum
(Ehrlichia phagocytophila)
Length = 1394
Score = 83.0 bits (196), Expect = 7e-15
Identities = 45/114 (39%), Positives = 67/114 (58%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
A P + +IS LL+ G +Y+G +G+K + +V +G Y +L H+VDDK
Sbjct: 1221 AAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVGYIYMLKLHHLVDDK 1280
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
IH+R+ GP ++ +QP+ G++ GG RFGEME A+GAA L+E L SD
Sbjct: 1281 IHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1334
Score = 39.5 bits (88), Expect = 0.086
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKG 149
EDMP +G DII+N +PSRM IG ++E G + N G
Sbjct: 1120 EDMPHLEDGTPVDIILNSLGVPSRMNIGQILETHLGWAAVNLG 1162
>UniRef50_A3FMP8 Cluster: DNA-directed RNA polymerase; n=5;
Veillonella|Rep: DNA-directed RNA polymerase -
Veillonella montpellierensis
Length = 1124
Score = 82.6 bits (195), Expect = 9e-15
Identities = 39/92 (42%), Positives = 57/92 (61%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
ATP D + + LQ G G V+Y+G TG ++ +V +G Y +L H+VDDK
Sbjct: 1032 ATPVFDGASEVDVFEALQLAGKSEDGKTVLYDGRTGEPMDNRVTVGYVYMLKLHHLVDDK 1091
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEME 437
IH+R+ GP ++ +QP+ G+A+ GG RFGEME
Sbjct: 1092 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1123
Score = 42.7 bits (96), Expect = 0.009
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 15 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIE 116
R+EDMPF +G I++NP +PSRM IG ++E
Sbjct: 816 RREDMPFLPDGTPVQIVLNPLGVPSRMNIGQVLE 849
>UniRef50_Q8EWX1 Cluster: DNA-directed RNA polymerase subunit beta;
n=42; Firmicutes|Rep: DNA-directed RNA polymerase subunit
beta - Mycoplasma penetrans
Length = 1375
Score = 82.2 bits (194), Expect = 1e-14
Identities = 46/113 (40%), Positives = 63/113 (55%)
Frame = +3
Query: 165 TPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKI 344
T +A+ I + G G + +G TG + +V +G Y +L HMVDDKI
Sbjct: 1179 TDLKEAMTEAGIDPINGKLGEGKSGKFNLIDGRTGEYFDGEVSVGIMYMLKLDHMVDDKI 1238
Query: 345 HSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
HSRA GP + +QP+ G++++GG RFGEME A+GAA LRE L SD
Sbjct: 1239 HSRAVGPYSKITQQPLGGKSQNGGQRFGEMEVWALEAYGAAHNLRELLTIKSD 1291
Score = 41.1 bits (92), Expect = 0.028
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIE 116
EDMP +G T DI++NP +PSRM IG ++E
Sbjct: 1049 EDMPHLEDGTTIDIMLNPLGVPSRMNIGQILE 1080
>UniRef50_O21237 Cluster: RNA polymerase subunit beta; n=1;
Reclinomonas americana|Rep: RNA polymerase subunit beta -
Reclinomonas americana
Length = 1478
Score = 81.0 bits (191), Expect = 3e-14
Identities = 42/114 (36%), Positives = 68/114 (59%)
Frame = +3
Query: 162 ATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
+TP ++ N I +LL+ G +++ + +G TG ++ +V +G Y +L H++D K
Sbjct: 1316 STPIFNSANNFDIDNLLRISGLNIQSKVTIIDGITGVVLDNKVTVGYMYMMKLNHLIDHK 1375
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
IH R+ GP I+ +Q +G++R+GG R GEME A+GAA L+E L SD
Sbjct: 1376 IHGRSTGPYNIITQQASKGKSRNGGQRLGEMEVWALQAYGAAYTLQEMLTFKSD 1429
Score = 41.1 bits (92), Expect = 0.028
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQG 128
EDMP+ +G DI+++P + SRM IG L+EC G
Sbjct: 1219 EDMPYLRDGTPLDIVLSPLGVSSRMNIGQLLECHLG 1254
>UniRef50_A6NYC9 Cluster: DNA-directed RNA polymerase; n=1;
Bacteroides capillosus ATCC 29799|Rep: DNA-directed RNA
polymerase - Bacteroides capillosus ATCC 29799
Length = 1237
Score = 59.3 bits (137), Expect(2) = 7e-14
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Frame = +3
Query: 237 GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA---RGPVQILVRQPMEGRAR 407
G ++N TG+ + V G Y +L+H V+ K H+RA + +QP EG AR
Sbjct: 1052 GTAYLWNPATGKCLENPVTFGVPYMLKLEHEVNHKFHARAGMLEEDYSQISKQPTEGSAR 1111
Query: 408 DGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
GG + GEME A+GA FL E +SD
Sbjct: 1112 GGGQKMGEMELCALAAYGATDFLYETCNSMSD 1143
Score = 40.7 bits (91), Expect(2) = 7e-14
Identities = 25/77 (32%), Positives = 35/77 (45%)
Frame = +3
Query: 15 RQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQ 194
+ +MP G DI++NP +PSRM IG E G ++ ++ PFN A
Sbjct: 940 KNSEMPCFMNGRQLDILLNPCGVPSRMNIGQNFEAYLGFIAYLLDVYVESDPFNGATKGD 999
Query: 195 KISSLLQDYGYHLRGNE 245
LL Y + L NE
Sbjct: 1000 --IKLLMRYVWDLANNE 1014
>UniRef50_Q05FH8 Cluster: DNA-directed RNA polymerase subunit beta;
n=3; Candidatus Carsonella ruddii|Rep: DNA-directed RNA
polymerase subunit beta - Carsonella ruddii (strain PV)
Length = 1267
Score = 79.4 bits (187), Expect = 9e-14
Identities = 40/106 (37%), Positives = 66/106 (62%)
Frame = +3
Query: 186 NVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGP 365
NV K++++++ G + ++++G TG++ V +G Y+ +L H+V DKI+SR+ GP
Sbjct: 1118 NVNKVNNIIKTIGINKNCELLLFDGITGKRYLQLVNVGYIYFMKLNHLVIDKIYSRSIGP 1177
Query: 366 VQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
I+ +QP+ G++ GG R GEME A+GAA L+E L SD
Sbjct: 1178 YSIVTQQPLGGKSNLGGQRLGEMEVWALEAYGAAFLLKEMLTIKSD 1223
Score = 36.7 bits (81), Expect = 0.61
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIE 116
E+MP+ G D+I+NP +PSRM +G L+E
Sbjct: 1011 ENMPYDKFGNKIDLILNPLGVPSRMNVGQLLE 1042
>UniRef50_Q3ZX01 Cluster: DNA-directed RNA polymerase subunit beta;
n=3; Dehalococcoides|Rep: DNA-directed RNA polymerase
subunit beta - Dehalococcoides sp. (strain CBDB1)
Length = 1273
Score = 79.0 bits (186), Expect = 1e-13
Identities = 38/89 (42%), Positives = 55/89 (61%)
Frame = +3
Query: 237 GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 416
G V+ +G TG + V +G Y +L H+V+DK+H+RA GP ++ +QP+ G+A+ GG
Sbjct: 1067 GKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGG 1126
Query: 417 LRFGEMERDCQIAHGAAQFLRERLFEVSD 503
RFGEME A+G A L+E L SD
Sbjct: 1127 QRFGEMEVWAMYAYGTAHNLQEMLTIKSD 1155
Score = 41.1 bits (92), Expect = 0.028
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKI 200
EDMP+ +G D+++NP +PSRM +G ++E G G ATP D + I
Sbjct: 911 EDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGHLLG-FRVATPVFDGADDTVI 969
Query: 201 SSLL 212
L
Sbjct: 970 EDAL 973
>UniRef50_Q6MJ09 Cluster: DNA-directed RNA polymerase subunit beta;
n=202; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta - Bdellovibrio bacteriovorus
Length = 1412
Score = 79.0 bits (186), Expect = 1e-13
Identities = 45/128 (35%), Positives = 66/128 (51%)
Frame = +3
Query: 120 IQGKVSSNKGEIGDATPFNDAVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLG 299
++ V K I TP D + LL G V+++G TG V +G
Sbjct: 1206 LKSMVQRMKHGIHVGTPVFDGARESDVKGLLAKAQVPSSGKSVLFDGRTGEPFTNPVTVG 1265
Query: 300 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLR 479
Y +L H+V++KIH+R+ GP ++ +QP+ G+A+ GG R GEME A+GAA L+
Sbjct: 1266 IMYMLKLHHLVEEKIHARSIGPYSLVSQQPLGGKAQFGGQRLGEMEVWAIEAYGAAYSLQ 1325
Query: 480 ERLFEVSD 503
E L SD
Sbjct: 1326 EFLTVKSD 1333
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGE 152
EDMP+ +G D+++NP +PSRM IG ++E G + N G+
Sbjct: 1124 EDMPYLADGTPVDMVLNPLGVPSRMNIGQILEVHLGWAAHNLGK 1167
>UniRef50_Q23U98 Cluster: DNA-directed RNA polymerase, beta subunit
family protein; n=6; Tetrahymena thermophila SB210|Rep:
DNA-directed RNA polymerase, beta subunit family protein
- Tetrahymena thermophila SB210
Length = 685
Score = 78.2 bits (184), Expect = 2e-13
Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 2/216 (0%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
+ MP+T +G DIIINP + +RMTIG IE + G D++ F D ++ Q
Sbjct: 473 ENQMPYTNDGTPIDIIINPCSFSTRMTIGMNIEQYTSYLVLLTGLFLDSSMFCDKIDRQ- 531
Query: 198 ISSLLQDYGYHLRGNEVMYNGHTGRKIN-AQVFLGPTYYQRLKHMVDDKIHSRARGPV-Q 371
++ ++ G + +Y TG I AQV G +Y + K+++ +
Sbjct: 532 -----EEIQRNILGQKKIYYPLTGEFIGYAQV--GFVFYAAQEQKAFSKLYAVGFNEAYR 584
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIA 551
V QP +G +GG R GEME A FL SD + + +C+ CGL A
Sbjct: 585 NQVFQPRDGAKNNGGSRLGEMEM--------AVFLSAGTTNHSDGFVVDICSHCGLYAHR 636
Query: 552 NLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMS 659
+ + CK C K+++ + ++ Y++K F++L++
Sbjct: 637 DQNQQKYYCKNCNGKSEVVKTQIQYSSK-HFKDLLN 671
>UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit beta;
n=5; Plasmodium|Rep: DNA-directed RNA polymerase subunit
beta - Plasmodium falciparum
Length = 1024
Score = 74.1 bits (174), Expect = 3e-12
Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVS---SNKGEIGDATPFNDAVNVQ 194
D+P+ I PDI I+ +IPSR+ IG + E I G S + + I + N N
Sbjct: 789 DIPYLNNKIQPDIFISAISIPSRINIGQIFEGIYGLNSLYLNTRYIISNNLNKNYYNNYN 848
Query: 195 KISSLLQ-DYGYHLRGNEVM---YNGH------TGRKINAQVFLGPTYYQRLKHMVDDKI 344
I + + +Y + N M YN + TG IN + L YY +L HM+ DK
Sbjct: 849 HIFNYYKYNYNNNFNINSKMSYNYNKYYLKNPFTGNMINNSICLNNIYYYKLIHMIKDKF 908
Query: 345 HSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
R G L +QP++G + GG RFGEME A GA+ +E SD
Sbjct: 909 RYRFIGLYSELTQQPIKGNTKQGGQRFGEMEVWALEAFGASYLFKEFFTYKSD 961
>UniRef50_Q2EEX2 Cluster: DNA-directed RNA polymerase subunit beta;
n=1; Helicosporidium sp. ex Simulium jonesii|Rep:
DNA-directed RNA polymerase subunit beta -
Helicosporidium sp. subsp. Simulium jonesii (Green alga)
Length = 1247
Score = 71.3 bits (167), Expect = 2e-11
Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 14/198 (7%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKIS 203
+MP +G DII+NP IPSRM +G + E + G E F++ ++
Sbjct: 1012 EMPLLPDGTPIDIILNPLGIPSRMNVGQIFESLLGLAGFYLNETYTINIFDEQFGLEASR 1071
Query: 204 SLLQDYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDK 341
S + Y G + +G TG+ + +G + +L HMV DK
Sbjct: 1072 SFVLSKLYKASILSNKPWLFLKKNAGKTNIIDGLTGKYFQQPITIGYSSILKLIHMVTDK 1131
Query: 342 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHV 521
+H R+ G L QP +G++ GG R GEME +GA+ L+E SD
Sbjct: 1132 LHGRSIGGYSTLTLQPTKGKSLLGGQRVGEMELWALQGYGASWALQELYTLKSDLVEARQ 1191
Query: 522 CNFCGLIAIANLRNNTFE 575
+F I N+ +N ++
Sbjct: 1192 -HFQNYINSFNIESNIYD 1208
>UniRef50_P05472 Cluster: Probable DNA-directed RNA polymerase; n=4;
Saccharomycetaceae|Rep: Probable DNA-directed RNA
polymerase - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 982
Score = 70.1 bits (164), Expect = 5e-11
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +3
Query: 273 KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI 452
K+ ++ +G Y L+H VDDK+ R G + I+ +QP+ GR R GGLRFG+MERD I
Sbjct: 580 KLENKIIVGKCLYLALRHQVDDKVQFRNGGNIDIVTKQPVSGRKRSGGLRFGQMERDILI 639
Query: 453 AHGAAQFLRE 482
GA ++E
Sbjct: 640 GLGAWNTIKE 649
Score = 36.7 bits (81), Expect = 0.61
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 42 EGITPDIIINPHAIPSRMTIGHLIE 116
E + D+IINPHA PSRMT+G + E
Sbjct: 542 EKVEIDLIINPHAFPSRMTLGQIKE 566
>UniRef50_A7SSE2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 913
Score = 68.9 bits (161), Expect = 1e-10
Identities = 30/51 (58%), Positives = 38/51 (74%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF 173
E+MPF+ G+TPDII NPH PSRMTIG +IE + GK ++ G + DATPF
Sbjct: 792 ENMPFSESGMTPDIIFNPHGFPSRMTIGMMIESMAGKSAALNGHVYDATPF 842
>UniRef50_Q9EMY3 Cluster: AMV066; n=2; Entomopoxvirinae|Rep: AMV066 -
Amsacta moorei entomopoxvirus (AmEPV)
Length = 1196
Score = 67.7 bits (158), Expect = 3e-10
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Frame = +3
Query: 291 FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQ 470
F+GP + RL M DKI R RG + ++ P G+ + GG++ GEME D +G+
Sbjct: 1044 FMGPMLFCRLSQMSADKISVRNRGRLDKYMQAP-SGKKKGGGIKIGEMESDVFATNGSVY 1102
Query: 471 FLRERLFEVSDPY-RIHVCNFCGLIAI--ANLRNNTFECKGCKN---KTQISQIRLPYAA 632
+ E + + Y H+C CG+ A N+ ++C C+N +I ++RL YA
Sbjct: 1103 AIHELQSDPDEFYLPAHICGNCGIFATYEENIEVKRWKCLQCENLGLSPEIIKMRLTYAT 1162
Query: 633 KLLFQELMSMNIA 671
K+ L + I+
Sbjct: 1163 KIFITLLNARGIS 1175
>UniRef50_Q06SF4 Cluster: DNA-directed RNA polymerase; n=1;
Stigeoclonium helveticum|Rep: DNA-directed RNA
polymerase - Stigeoclonium helveticum (Green alga)
Length = 1080
Score = 62.1 bits (144), Expect = 1e-08
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Frame = +3
Query: 18 QEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQK 197
++DMP+ +G D+ +NP +PSRM +G + EC+ G + GE PF++A +
Sbjct: 455 RQDMPYLPDGTPIDMALNPLGVPSRMNVGQIYECLLGLAGKHLGEQYRIQPFDEAFGPEA 514
Query: 198 ISSLLQDYGYHLR--------------GNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 335
S + Y + G +++G TG + + G +Y +L H+VD
Sbjct: 515 SRSFVFSKLYSAKTKTGQSWLFQPTNPGKLKLFDGRTGNCFDQAITTGYSYMIKLVHLVD 574
Query: 336 DKIH 347
+KIH
Sbjct: 575 EKIH 578
Score = 48.0 bits (109), Expect = 2e-04
Identities = 33/96 (34%), Positives = 50/96 (52%)
Frame = +3
Query: 216 DYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPME 395
++GYH +G E + + G V +Y R + +SR+ GP ++ +QP++
Sbjct: 927 NHGYHSKGKEEVLP-YQGAVYCLSV-PNEIFYVRRNGLSVWTGNSRSSGPYSLITQQPLK 984
Query: 396 GRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSD 503
GR++ GG R GEME A+GAA L E L SD
Sbjct: 985 GRSKHGGQRLGEMEVWAIEAYGAAFTLLELLTIKSD 1020
>UniRef50_A7MA28 Cluster: RNA Polymerase II; n=11;
Caryophyllaceae|Rep: RNA Polymerase II - Polycarpon
alsinifolium
Length = 64
Score = 57.2 bits (132), Expect = 4e-07
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +3
Query: 78 AIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
A+PSRMTIG LIECI GKV+++ G+ GDATPF DA
Sbjct: 1 ALPSRMTIGQLIECIMGKVAAHVGKEGDATPFTDA 35
>UniRef50_Q4MY95 Cluster: DNA-directed RNA polymerase subunit beta;
n=1; Theileria parva|Rep: DNA-directed RNA polymerase
subunit beta - Theileria parva
Length = 1005
Score = 48.4 bits (110), Expect = 2e-04
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN-------DA 182
D+P+T G+ P I +P +R+ +G +E G N P N
Sbjct: 788 DLPYTFRGLCPYSITSPIGALARINLGQFLEGSCGYFGLNFN-CRIKAPINLYNYHLYSN 846
Query: 183 VNVQKISSLLQDYG---YHLRGNEVMYNGHTGRKI-NAQVFLGPTYYQRLKHMVDDKIHS 350
+ ++ I + L Y + + + + TG ++ N + L P Y+ +L H K
Sbjct: 847 MYLKNIFNSLNVYNNSYINFSIEKYLRDFKTGYQLKNFNLMLMP-YFLKLMHTSKSKFQY 905
Query: 351 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRE 482
R G L +QP++G+ +G +FGEME +HG+A +RE
Sbjct: 906 RTVGKYSSLTQQPVKGKRVNGSQKFGEMEVWALESHGSAYTIRE 949
>UniRef50_A7AXE5 Cluster: RpoB; n=1; Babesia bovis|Rep: RpoB - Babesia
bovis
Length = 971
Score = 39.9 bits (89), Expect = 0.065
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Frame = +3
Query: 24 DMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN-------DA 182
+ P+T E P+II +P SRM +G IE G + + + +P N +
Sbjct: 765 ESPYTSEDKLPNIITSPIGAASRMNVGQFIEGYIGN-TCDIDNVRIKSPINLHSSDMYSS 823
Query: 183 VNVQKISSLLQDYGYHLRGNE----VMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 350
+ V+ +S+ + + L+ ++ V + TG K+ Y+ +L H K
Sbjct: 824 LYVKSVSNKINNRYVKLKSSQNAVSVFRDFKTGYKLKGFTHHVILYFFKLMHTSKSKFRY 883
Query: 351 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRE 482
R + Q + G +++ +FGEME AHGA+ L+E
Sbjct: 884 RCSSSKLV---QYVHGESKE--QKFGEMEVWSLEAHGASYNLKE 922
>UniRef50_A5AMN9 Cluster: DNA-directed RNA polymerase; n=1; Vitis
vinifera|Rep: DNA-directed RNA polymerase - Vitis
vinifera (Grape)
Length = 496
Score = 38.3 bits (85), Expect = 0.20
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIP 86
G +QED PF+ GI PD+I+NPH P
Sbjct: 399 GTIIQQEDFPFSERGICPDLIMNPHGFP 426
>UniRef50_Q6ZZ55 Cluster: RNA polymerase II; n=3;
Caryophyllaceae|Rep: RNA polymerase II - Lychnis
abyssinica
Length = 40
Score = 36.3 bits (80), Expect = 0.80
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +3
Query: 114 ECIQGKVSSNKGEIGDATPFNDAVNVQ 194
ECI GKV+++ G+ GDATPF D Q
Sbjct: 1 ECIMGKVAAHVGKEGDATPFTDVTGGQ 27
>UniRef50_Q23JY4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 892
Score = 35.1 bits (77), Expect = 1.8
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = +3
Query: 429 EMERDCQIAHGAAQFL--RERL-FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNK 596
E+E IA A+Q + ++R+ F D R ++C +C ++ AN+RN+TFEC+ C ++
Sbjct: 692 EIEIIDNIAFSASQCIEGQQRIQFNNLDNSR-YICQYCSSMS-ANIRNDTFECQSCDSQ 748
>UniRef50_Q1NYW3 Cluster: DNA-directed RNA polymerase; n=1; Candidatus
Sulcia muelleri str. Hc (Homalodisca coagulata)|Rep:
DNA-directed RNA polymerase - Candidatus Sulcia muelleri
str. Hc (Homalodisca coagulata)
Length = 951
Score = 33.5 bits (73), Expect = 5.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 15 RQEDMPFTCEGITPDIIINPHAIPSR 92
++EDMP+ +G + D+++NP +PSR
Sbjct: 926 KEEDMPYLEDGTSVDLVLNPLGVPSR 951
>UniRef50_Q7S2N8 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 573
Score = 33.5 bits (73), Expect = 5.6
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +3
Query: 54 PDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQDYGYHL 233
P ++ H ++ + H + +QG S G TP AVN + +S+L + L
Sbjct: 45 PKAVLGSHPNTRKLEVAHSFQTLQGVSHSIGGSSSGTTP--RAVNRRSAASILGQHQRRL 102
Query: 234 RGNEVMYNG-HTGRKINAQ 287
R N V +G H G N +
Sbjct: 103 RQNSVHTHGSHGGGSNNGE 121
>UniRef50_Q5WRA3 Cluster: Multidrug resistance associated protein;
n=3; Plasmodium (Vinckeia)|Rep: Multidrug resistance
associated protein - Plasmodium berghei
Length = 1939
Score = 32.7 bits (71), Expect = 9.9
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +1
Query: 484 VYLKYQILTVYTCVISAA*SL*LICVTIHLNAKAAKTKLKFRKSVYHMQPSYYSRN 651
VYLKY IL +++ S +I I ++AKA T++ F+ +Y P++YS N
Sbjct: 1332 VYLKYFILLPALSLVTTFISYMVIAHGIMISAKAIHTEV-FKSMLYAPIPAFYSHN 1386
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 748,297,518
Number of Sequences: 1657284
Number of extensions: 15519659
Number of successful extensions: 34287
Number of sequences better than 10.0: 162
Number of HSP's better than 10.0 without gapping: 32951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34131
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -