Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0336
(746 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X63563-1|CAA45124.1| 1174|Homo sapiens RNA polymerase II 140 kDa... 444 e-124
BC023503-1|AAH23503.2| 1174|Homo sapiens polymerase (RNA) II (DN... 444 e-124
AF055028-1|AAC09367.1| 476|Homo sapiens RNA polymerase II 140 k... 444 e-124
BC046238-1|AAH46238.1| 1133|Homo sapiens polymerase (RNA) III (D... 230 3e-60
AY092084-1|AAM18214.1| 1133|Homo sapiens RNA polymerase III subu... 230 3e-60
AK001250-1|BAA91581.1| 343|Homo sapiens protein ( Homo sapiens ... 230 3e-60
AK001161-1|BAA91527.1| 343|Homo sapiens protein ( Homo sapiens ... 230 5e-60
BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein. 184 3e-46
BC096748-1|AAH96748.1| 594|Homo sapiens POLR1B protein protein. 184 3e-46
BC073857-1|AAH73857.1| 560|Homo sapiens POLR1B protein protein. 184 3e-46
BC004882-1|AAH04882.4| 582|Homo sapiens POLR1B protein protein. 184 3e-46
AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens ... 184 3e-46
AK022890-1|BAB14296.1| 714|Homo sapiens protein ( Homo sapiens ... 184 3e-46
AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens ... 184 3e-46
AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein. 184 3e-46
AK025574-1|BAB15175.1| 459|Homo sapiens protein ( Homo sapiens ... 163 6e-40
>X63563-1|CAA45124.1| 1174|Homo sapiens RNA polymerase II 140 kDa
subunit protein.
Length = 1174
Score = 444 bits (1093), Expect = e-124
Identities = 197/229 (86%), Positives = 218/229 (95%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIEC+QGKVS+NKGEIGDATPFNDA
Sbjct: 946 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDA 1005
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
VNVQKIS+LL DYGYHLRGNEV+YNG TGRKI +Q+F+GPTYYQRLKHMVDDKIHSRARG
Sbjct: 1006 VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARG 1065
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+QIL RQPMEGR+RDGGLRFGEMERDCQIAHGAAQFLRERLFE SDPY++HVCN CG++
Sbjct: 1066 PIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIM 1125
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
AIAN R +T+EC+GC+NKTQIS +R+PYA KLLFQELMSM+IAPR+M V
Sbjct: 1126 AIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV 1174
>BC023503-1|AAH23503.2| 1174|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide B, 140kDa protein.
Length = 1174
Score = 444 bits (1093), Expect = e-124
Identities = 197/229 (86%), Positives = 218/229 (95%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIEC+QGKVS+NKGEIGDATPFNDA
Sbjct: 946 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDA 1005
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
VNVQKIS+LL DYGYHLRGNEV+YNG TGRKI +Q+F+GPTYYQRLKHMVDDKIHSRARG
Sbjct: 1006 VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARG 1065
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+QIL RQPMEGR+RDGGLRFGEMERDCQIAHGAAQFLRERLFE SDPY++HVCN CG++
Sbjct: 1066 PIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIM 1125
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
AIAN R +T+EC+GC+NKTQIS +R+PYA KLLFQELMSM+IAPR+M V
Sbjct: 1126 AIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV 1174
>AF055028-1|AAC09367.1| 476|Homo sapiens RNA polymerase II 140 kDa
subunit protein.
Length = 476
Score = 444 bits (1093), Expect = e-124
Identities = 197/229 (86%), Positives = 218/229 (95%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIEC+QGKVS+NKGEIGDATPFNDA
Sbjct: 248 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDA 307
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
VNVQKIS+LL DYGYHLRGNEV+YNG TGRKI +Q+F+GPTYYQRLKHMVDDKIHSRARG
Sbjct: 308 VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARG 367
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P+QIL RQPMEGR+RDGGLRFGEMERDCQIAHGAAQFLRERLFE SDPY++HVCN CG++
Sbjct: 368 PIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIM 427
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
AIAN R +T+EC+GC+NKTQIS +R+PYA KLLFQELMSM+IAPR+M V
Sbjct: 428 AIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV 476
>BC046238-1|AAH46238.1| 1133|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide B protein.
Length = 1133
Score = 230 bits (563), Expect = 3e-60
Identities = 113/226 (50%), Positives = 143/226 (63%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPF GI PDII+NPH PSRMT+G LIE + GK G T F +
Sbjct: 908 GLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS 967
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ + L +GY+ G + + +G TG + A ++ GP YYQ+LKHMV DK+H+RARG
Sbjct: 968 -KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARG 1026
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD + + VC CGL+
Sbjct: 1027 PRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 1086
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
+ C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 1087 GYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
>AY092084-1|AAM18214.1| 1133|Homo sapiens RNA polymerase III subunit
RPC2 protein.
Length = 1133
Score = 230 bits (563), Expect = 3e-60
Identities = 113/226 (50%), Positives = 143/226 (63%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPF GI PDII+NPH PSRMT+G LIE + GK G T F +
Sbjct: 908 GLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS 967
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ + L +GY+ G + + +G TG + A ++ GP YYQ+LKHMV DK+H+RARG
Sbjct: 968 -KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARG 1026
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD + + VC CGL+
Sbjct: 1027 PRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 1086
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
+ C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 1087 GYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
>AK001250-1|BAA91581.1| 343|Homo sapiens protein ( Homo sapiens
cDNA FLJ10388 fis, clone NT2RM4000024, moderately
similar to DNA-DIRECTED RNA POLYMERASE III 128 KD
POLYPEPTIDE (EC ).
Length = 343
Score = 230 bits (563), Expect = 3e-60
Identities = 113/226 (50%), Positives = 143/226 (63%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPF GI PDII+NPH PSRMT+G LIE + GK G T F +
Sbjct: 118 GLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS 177
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ + L +GY+ G + + +G TG + A ++ GP YYQ+LKHMV DK+H+RARG
Sbjct: 178 -KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARG 236
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD + + VC CGL+
Sbjct: 237 PRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 296
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
+ C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 297 GYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 336
>AK001161-1|BAA91527.1| 343|Homo sapiens protein ( Homo sapiens
cDNA FLJ10299 fis, clone NT2RM2000013, moderately
similar to DNA-DIRECTED RNA POLYMERASE III 128 KD
POLYPEPTIDE (EC ).
Length = 343
Score = 230 bits (562), Expect = 5e-60
Identities = 113/226 (50%), Positives = 143/226 (63%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPF GI PDII+NPH PSRMT+G LIE + GK G T F +
Sbjct: 118 GLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGS 177
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ + L +GY+ G + + +G TG + A ++ GP YYQ+LKHMV DK+H+RARG
Sbjct: 178 -KVKDVCEDLVCHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARG 236
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD + + VC CGL+
Sbjct: 237 PRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLL 296
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
+ C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 297 GYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 336
>BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein.
Length = 952
Score = 184 bits (448), Expect = 3e-46
Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
EDMPFT G+ PDI+ NPH PSRMTIG LIE + GK ++ G DATPF + +
Sbjct: 717 EDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSAL 776
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
+ +L+ GY+ G E +Y+G +G ++ A +F+G YYQRL+HMV DK R G
Sbjct: 777 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 836
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI--- 542
+ QP+ GR GG+RFGEMERD +AHG + L +RLF SD HVC CG +
Sbjct: 837 RVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSP 896
Query: 543 -------AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
+ + +RN + C C I + +PY + EL +MNI +L VV
Sbjct: 897 LLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 952
>BC096748-1|AAH96748.1| 594|Homo sapiens POLR1B protein protein.
Length = 594
Score = 184 bits (448), Expect = 3e-46
Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
EDMPFT G+ PDI+ NPH PSRMTIG LIE + GK ++ G DATPF + +
Sbjct: 359 EDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSAL 418
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
+ +L+ GY+ G E +Y+G +G ++ A +F+G YYQRL+HMV DK R G
Sbjct: 419 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 478
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI--- 542
+ QP+ GR GG+RFGEMERD +AHG + L +RLF SD HVC CG +
Sbjct: 479 RVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSP 538
Query: 543 -------AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
+ + +RN + C C I + +PY + EL +MNI +L VV
Sbjct: 539 LLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 594
>BC073857-1|AAH73857.1| 560|Homo sapiens POLR1B protein protein.
Length = 560
Score = 184 bits (448), Expect = 3e-46
Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
EDMPFT G+ PDI+ NPH PSRMTIG LIE + GK ++ G DATPF + +
Sbjct: 325 EDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSAL 384
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
+ +L+ GY+ G E +Y+G +G ++ A +F+G YYQRL+HMV DK R G
Sbjct: 385 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 444
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI--- 542
+ QP+ GR GG+RFGEMERD +AHG + L +RLF SD HVC CG +
Sbjct: 445 RVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSP 504
Query: 543 -------AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
+ + +RN + C C I + +PY + EL +MNI +L VV
Sbjct: 505 LLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 560
>BC004882-1|AAH04882.4| 582|Homo sapiens POLR1B protein protein.
Length = 582
Score = 184 bits (448), Expect = 3e-46
Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
EDMPFT G+ PDI+ NPH PSRMTIG LIE + GK ++ G DATPF + +
Sbjct: 347 EDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSAL 406
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
+ +L+ GY+ G E +Y+G +G ++ A +F+G YYQRL+HMV DK R G
Sbjct: 407 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 466
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI--- 542
+ QP+ GR GG+RFGEMERD +AHG + L +RLF SD HVC CG +
Sbjct: 467 RVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSP 526
Query: 543 -------AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
+ + +RN + C C I + +PY + EL +MNI +L VV
Sbjct: 527 LLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 582
>AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens cDNA
FLJ46164 fis, clone TESTI4002799, highly similar to
DNA-directed RNA polymerase I 135 kDa polypeptide (EC
2.7.7.6). ).
Length = 1135
Score = 184 bits (448), Expect = 3e-46
Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
EDMPFT G+ PDI+ NPH PSRMTIG LIE + GK ++ G DATPF + +
Sbjct: 900 EDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSAL 959
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
+ +L+ GY+ G E +Y+G +G ++ A +F+G YYQRL+HMV DK R G
Sbjct: 960 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI--- 542
+ QP+ GR GG+RFGEMERD +AHG + L +RLF SD HVC CG +
Sbjct: 1020 RVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSP 1079
Query: 543 -------AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
+ + +RN + C C I + +PY + EL +MNI +L VV
Sbjct: 1080 LLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1135
>AK022890-1|BAB14296.1| 714|Homo sapiens protein ( Homo sapiens cDNA
FLJ12828 fis, clone NT2RP2002993, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 714
Score = 184 bits (448), Expect = 3e-46
Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
EDMPFT G+ PDI+ NPH PSRMTIG LIE + GK ++ G DATPF + +
Sbjct: 479 EDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSAL 538
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
+ +L+ GY+ G E +Y+G +G ++ A +F+G YYQRL+HMV DK R G
Sbjct: 539 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 598
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI--- 542
+ QP+ GR GG+RFGEMERD +AHG + L +RLF SD HVC CG +
Sbjct: 599 RVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSP 658
Query: 543 -------AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
+ + +RN + C C I + +PY + EL +MNI +L VV
Sbjct: 659 LLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 714
>AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens cDNA
FLJ12471 fis, clone NT2RM1000894, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 1079
Score = 184 bits (448), Expect = 3e-46
Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
EDMPFT G+ PDI+ NPH PSRMTIG LIE + GK ++ G DATPF + +
Sbjct: 844 EDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSAL 903
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
+ +L+ GY+ G E +Y+G +G ++ A +F+G YYQRL+HMV DK R G
Sbjct: 904 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 963
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI--- 542
+ QP+ GR GG+RFGEMERD +AHG + L +RLF SD HVC CG +
Sbjct: 964 RVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSP 1023
Query: 543 -------AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
+ + +RN + C C I + +PY + EL +MNI +L VV
Sbjct: 1024 LLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1079
>AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein.
Length = 1135
Score = 184 bits (448), Expect = 3e-46
Identities = 97/236 (41%), Positives = 132/236 (55%), Gaps = 13/236 (5%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
EDMPFT G+ PDI+ NPH PSRMTIG LIE + GK ++ G DATPF + +
Sbjct: 900 EDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSAL 959
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
+ +L+ GY+ G E +Y+G +G ++ A +F+G YYQRL+HMV DK R G
Sbjct: 960 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 1019
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI--- 542
+ QP+ GR GG+RFGEMERD +AHG + L +RLF SD HVC CG +
Sbjct: 1020 RVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSP 1079
Query: 543 -------AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMVV 689
+ + +RN + C C I + +PY + EL +MNI +L VV
Sbjct: 1080 LLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVV 1135
>AK025574-1|BAB15175.1| 459|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21921 fis, clone HEP04058. ).
Length = 459
Score = 163 bits (396), Expect = 6e-40
Identities = 80/171 (46%), Positives = 105/171 (61%), Gaps = 3/171 (1%)
Frame = +3
Query: 21 EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
EDMPFT G+ PDI+ NPH PSRMTIG LIE + GK ++ G DATPF + +
Sbjct: 259 EDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSAL 318
Query: 192 QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
+ +L+ GY+ G E +Y+G +G ++ A +F+G YYQRL+HMV DK R G
Sbjct: 319 EYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARD 378
Query: 372 ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVC 524
+ QP+ GR GG+RFGEMERD +AHG + L +RLF SD HVC
Sbjct: 379 RVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVC 429
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,146,426
Number of Sequences: 237096
Number of extensions: 2446370
Number of successful extensions: 4037
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4011
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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