Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0336
(746 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X05709-1|CAA29180.2| 1123|Drosophila melanogaster RNA polymerase... 474 e-134
BT003265-1|AAO25022.1| 1176|Drosophila melanogaster LD22387p pro... 474 e-134
AE014297-1804|AAF55024.1| 1176|Drosophila melanogaster CG3180-PA... 474 e-134
X58826-1|CAA41631.1| 1135|Drosophila melanogaster RNA polymerase... 225 5e-59
AY121645-1|AAM51972.1| 1146|Drosophila melanogaster LD14594p pro... 225 5e-59
AE013599-1387|AAF58590.1| 1137|Drosophila melanogaster CG8344-PA... 225 5e-59
X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase... 187 1e-47
AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p pro... 187 1e-47
AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA p... 187 1e-47
BT022207-1|AAY51601.1| 448|Drosophila melanogaster IP01005p pro... 29 5.1
AE014296-1117|AAF50662.1| 448|Drosophila melanogaster CG10147-P... 29 5.1
AY051741-1|AAK93165.1| 322|Drosophila melanogaster LD26737p pro... 29 8.9
AE014298-1821|AAF48210.2| 322|Drosophila melanogaster CG4407-PA... 29 8.9
>X05709-1|CAA29180.2| 1123|Drosophila melanogaster RNA polymerase
protein.
Length = 1123
Score = 474 bits (1168), Expect = e-134
Identities = 215/228 (94%), Positives = 224/228 (98%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GIQYRQEDM FTCEG+ PDIIINPHAIPSRMTIGHLIEC+QGK+ SNKGEIGDATPFNDA
Sbjct: 895 GIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDA 954
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
VNVQKIS+ LQ+YGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG
Sbjct: 955 VNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 1014
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
PVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERLFEVSDPYR+H+CNFCGLI
Sbjct: 1015 PVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLI 1074
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
AIANLRNNTFECKGCKNKTQISQ+RLPYAAKLLFQELMSMNIAPRLMV
Sbjct: 1075 AIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1122
>BT003265-1|AAO25022.1| 1176|Drosophila melanogaster LD22387p protein.
Length = 1176
Score = 474 bits (1168), Expect = e-134
Identities = 215/228 (94%), Positives = 224/228 (98%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GIQYRQEDM FTCEG+ PDIIINPHAIPSRMTIGHLIEC+QGK+ SNKGEIGDATPFNDA
Sbjct: 948 GIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDA 1007
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
VNVQKIS+ LQ+YGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG
Sbjct: 1008 VNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 1067
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
PVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERLFEVSDPYR+H+CNFCGLI
Sbjct: 1068 PVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLI 1127
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
AIANLRNNTFECKGCKNKTQISQ+RLPYAAKLLFQELMSMNIAPRLMV
Sbjct: 1128 AIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175
>AE014297-1804|AAF55024.1| 1176|Drosophila melanogaster CG3180-PA
protein.
Length = 1176
Score = 474 bits (1168), Expect = e-134
Identities = 215/228 (94%), Positives = 224/228 (98%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
GIQYRQEDM FTCEG+ PDIIINPHAIPSRMTIGHLIEC+QGK+ SNKGEIGDATPFNDA
Sbjct: 948 GIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDA 1007
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
VNVQKIS+ LQ+YGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG
Sbjct: 1008 VNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 1067
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
PVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERLFEVSDPYR+H+CNFCGLI
Sbjct: 1068 PVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLI 1127
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
AIANLRNNTFECKGCKNKTQISQ+RLPYAAKLLFQELMSMNIAPRLMV
Sbjct: 1128 AIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 1175
>X58826-1|CAA41631.1| 1135|Drosophila melanogaster RNA polymerase III
second-largestsubunit protein.
Length = 1135
Score = 225 bits (550), Expect = 5e-59
Identities = 104/228 (45%), Positives = 149/228 (65%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPF GI PD+I+NPH PSRMT+G +E + GK +G+ T F +
Sbjct: 912 GLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGS 971
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ I + L+ +G++ G + Y+G TG + A ++ GP YYQ+LKHMV DK+H+RARG
Sbjct: 972 -KVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARG 1030
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P +L RQP +GR+R+GGLR GEMERDC I++GA+ + ERL SD + + VC CG +
Sbjct: 1031 PKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRM 1090
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
A + C C++ +S+I +PYA KLLFQEL SMN+ P++++
Sbjct: 1091 AYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMIL 1132
>AY121645-1|AAM51972.1| 1146|Drosophila melanogaster LD14594p protein.
Length = 1146
Score = 225 bits (550), Expect = 5e-59
Identities = 104/228 (45%), Positives = 149/228 (65%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPF GI PD+I+NPH PSRMT+G +E + GK +G+ T F +
Sbjct: 923 GLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGS 982
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ I + L+ +G++ G + Y+G TG + A ++ GP YYQ+LKHMV DK+H+RARG
Sbjct: 983 -KVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARG 1041
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P +L RQP +GR+R+GGLR GEMERDC I++GA+ + ERL SD + + VC CG +
Sbjct: 1042 PKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRM 1101
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
A + C C++ +S+I +PYA KLLFQEL SMN+ P++++
Sbjct: 1102 AYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMIL 1143
>AE013599-1387|AAF58590.1| 1137|Drosophila melanogaster CG8344-PA
protein.
Length = 1137
Score = 225 bits (550), Expect = 5e-59
Identities = 104/228 (45%), Positives = 149/228 (65%)
Frame = +3
Query: 3 GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
G+ QEDMPF GI PD+I+NPH PSRMT+G +E + GK +G+ T F +
Sbjct: 914 GLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGS 973
Query: 183 VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
V+ I + L+ +G++ G + Y+G TG + A ++ GP YYQ+LKHMV DK+H+RARG
Sbjct: 974 -KVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARG 1032
Query: 363 PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
P +L RQP +GR+R+GGLR GEMERDC I++GA+ + ERL SD + + VC CG +
Sbjct: 1033 PKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRM 1092
Query: 543 AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
A + C C++ +S+I +PYA KLLFQEL SMN+ P++++
Sbjct: 1093 AYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMIL 1134
>X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase 3,
second largestsubunit protein.
Length = 1129
Score = 187 bits (456), Expect = 1e-47
Identities = 102/238 (42%), Positives = 141/238 (59%), Gaps = 15/238 (6%)
Frame = +3
Query: 9 QYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN---D 179
+Y ED+PFT G+ PDI+ NPH PSRMTI +IE + GK ++ G + DATPF +
Sbjct: 887 KYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEE 946
Query: 180 AVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 359
+ +L+ GY+ G E +Y+G GR++ A +F G +YQRL+HMV DK R+
Sbjct: 947 NTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRST 1006
Query: 360 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 539
G V+ QP++GR R GG+RFGEMERD I+HGAA L++RLF SD VC+ CG
Sbjct: 1007 GAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGS 1066
Query: 540 IAIANL-----RNNT-------FECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPR 677
I +A L RN T C+ C + + +S I +P++ K L EL S+NI R
Sbjct: 1067 I-LAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123
>AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p protein.
Length = 1129
Score = 187 bits (456), Expect = 1e-47
Identities = 102/238 (42%), Positives = 141/238 (59%), Gaps = 15/238 (6%)
Frame = +3
Query: 9 QYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN---D 179
+Y ED+PFT G+ PDI+ NPH PSRMTI +IE + GK ++ G + DATPF +
Sbjct: 887 KYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEE 946
Query: 180 AVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 359
+ +L+ GY+ G E +Y+G GR++ A +F G +YQRL+HMV DK R+
Sbjct: 947 NTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRST 1006
Query: 360 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 539
G V+ QP++GR R GG+RFGEMERD I+HGAA L++RLF SD VC+ CG
Sbjct: 1007 GAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGS 1066
Query: 540 IAIANL-----RNNT-------FECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPR 677
I +A L RN T C+ C + + +S I +P++ K L EL S+NI R
Sbjct: 1067 I-LAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123
>AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA
protein.
Length = 1129
Score = 187 bits (456), Expect = 1e-47
Identities = 102/238 (42%), Positives = 141/238 (59%), Gaps = 15/238 (6%)
Frame = +3
Query: 9 QYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFN---D 179
+Y ED+PFT G+ PDI+ NPH PSRMTI +IE + GK ++ G + DATPF +
Sbjct: 887 KYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEE 946
Query: 180 AVNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 359
+ +L+ GY+ G E +Y+G GR++ A +F G +YQRL+HMV DK R+
Sbjct: 947 NTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRST 1006
Query: 360 GPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGL 539
G V+ QP++GR R GG+RFGEMERD I+HGAA L++RLF SD VC+ CG
Sbjct: 1007 GAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGS 1066
Query: 540 IAIANL-----RNNT-------FECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPR 677
I +A L RN T C+ C + + +S I +P++ K L EL S+NI R
Sbjct: 1067 I-LAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINAR 1123
>BT022207-1|AAY51601.1| 448|Drosophila melanogaster IP01005p
protein.
Length = 448
Score = 29.5 bits (63), Expect = 5.1
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +3
Query: 414 GLRFGEMERDCQ--IAHGAA-QFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG 584
G+RF E C H A+ ++ + + ++ P + H+C FCG + T
Sbjct: 225 GMRFVCEEEGCNRMYRHKASLKYHQSKAHDIGKPLKTHMCEFCGRVF------KTGSALS 278
Query: 585 CKNKTQISQIRLPYAAKL 638
T Q+ LPYA +L
Sbjct: 279 QHRFTHGDQLVLPYACEL 296
>AE014296-1117|AAF50662.1| 448|Drosophila melanogaster CG10147-PA
protein.
Length = 448
Score = 29.5 bits (63), Expect = 5.1
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = +3
Query: 414 GLRFGEMERDCQ--IAHGAA-QFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG 584
G+RF E C H A+ ++ + + ++ P + H+C FCG + T
Sbjct: 225 GMRFVCEEEGCNRMYRHKASLKYHQSKAHDIGKPLKTHMCEFCGRVF------KTGSALS 278
Query: 585 CKNKTQISQIRLPYAAKL 638
T Q+ LPYA +L
Sbjct: 279 QHRFTHGDQLVLPYACEL 296
>AY051741-1|AAK93165.1| 322|Drosophila melanogaster LD26737p
protein.
Length = 322
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 128 PLNTLNQVTNCHT*RDSVRINNDIWCYTFASKWHIFL 18
PL+T+N+ T ++ NN I C SK H+FL
Sbjct: 25 PLSTMNECRKNITNITNITANNSILCAKSISKKHLFL 61
>AE014298-1821|AAF48210.2| 322|Drosophila melanogaster CG4407-PA,
isoform A protein.
Length = 322
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 128 PLNTLNQVTNCHT*RDSVRINNDIWCYTFASKWHIFL 18
PL+T+N+ T ++ NN I C SK H+FL
Sbjct: 25 PLSTMNECRKNITNITNITANNSILCAKSISKKHLFL 61
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,403,776
Number of Sequences: 53049
Number of extensions: 736156
Number of successful extensions: 1804
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1795
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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