Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0336
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...   430   e-121
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr...   222   2e-58
U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase ...   208   3e-54
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...   175   2e-44
AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical ...    31   0.87 
AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical ...    31   0.87 
AF003144-5|AAV58874.1|  537|Caenorhabditis elegans Amino acid tr...    29   3.5  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
            (b) subunit protein2 protein.
          Length = 1193

 Score =  430 bits (1060), Expect = e-121
 Identities = 189/228 (82%), Positives = 211/228 (92%)
 Frame = +3

Query: 3    GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
            GI YRQEDMPFT EG+TPDIIINPHA+PSRMTIGHLIEC+QGK+S+NKGEIGDATPFND 
Sbjct: 952  GIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDT 1011

Query: 183  VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
            VNVQKIS LL +YGYHLRGNEVMYNGHTG+K+  Q+F GPTYYQRLKHMVDDKIHSRARG
Sbjct: 1012 VNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARG 1071

Query: 363  PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
            P+Q++ RQPMEGRARDGGLRFGEMERDCQI+HGA QFLRERLFEVSDPY ++VCN CGLI
Sbjct: 1072 PIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCGLI 1131

Query: 543  AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRLMV 686
             +ANLR N+FECK C+NKTQ+S +R+PYA KLLFQELMSM+IAPRLMV
Sbjct: 1132 VVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMV 1179


>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical protein
            F09F7.3 protein.
          Length = 1154

 Score =  222 bits (543), Expect = 2e-58
 Identities = 108/226 (47%), Positives = 146/226 (64%)
 Frame = +3

Query: 3    GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
            G+  +QEDMPF   G+ PD+I+NPH  PSRMT+G L+E + GK     G     T F   
Sbjct: 929  GLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAFGGD 988

Query: 183  VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 362
              V+ +   L   GY+  G +++ +G TG+ ++A ++ GP YYQ+LKHMV DK+H+RARG
Sbjct: 989  -QVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARG 1047

Query: 363  PVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLI 542
            P   L RQP EGR+R+GGLR GEMERDC IA+GA+  L ERL   SD +++ VC  CG+I
Sbjct: 1048 PRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVDVCTGCGVI 1107

Query: 543  AIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIAPRL 680
                       C+ C++   ++ I++PYA KLLFQEL SMNI PRL
Sbjct: 1108 GSKGW------CQKCRSSKSMANIKIPYACKLLFQELQSMNIVPRL 1147


>U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase II,
            second largestsubunit protein.
          Length = 859

 Score =  208 bits (508), Expect = 3e-54
 Identities = 90/107 (84%), Positives = 99/107 (92%)
 Frame = +3

Query: 3    GIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPFNDA 182
            GI YRQEDMPFT EG+TPDIIINPHA+PSRMTIGHLIEC+QGK+S+NKGEIGDATPFND 
Sbjct: 753  GIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQGKLSANKGEIGDATPFNDT 812

Query: 183  VNVQKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLK 323
            VNVQKIS LL +YGYHLRGNEVMYNGHTG+K+  Q+F GPTYYQRLK
Sbjct: 813  VNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLK 859


>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical protein
            F14B4.3 protein.
          Length = 1127

 Score =  175 bits (427), Expect = 2e-44
 Identities = 95/243 (39%), Positives = 132/243 (54%), Gaps = 23/243 (9%)
 Frame = +3

Query: 21   EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQGKVSSNKGEIGDATPF---NDAVNV 191
            E +PF+  G+ PDII NPH  PSRMTIG +IE + GK ++  GE  DA+PF    D   +
Sbjct: 874  ESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFNEDNTAI 933

Query: 192  QKISSLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQ 371
                 LL   GY+  GNE  Y+G  GR++  Q+F G  YYQRL+HM+ DK   RA GP+ 
Sbjct: 934  NHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRATGPID 993

Query: 372  ILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCG--LIA 545
             +  QP++GR + GG+RFGEMERD  IAHG +  L++RL   SD    + C  CG  L  
Sbjct: 994  PITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRCGSLLSV 1053

Query: 546  IANLR------------------NNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNIA 671
            + + R                    T  C+ C    Q+  +++P   + L  EL +MN+ 
Sbjct: 1054 LMSSRAGSHLLKKKRKDDEPLDYTETQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVK 1113

Query: 672  PRL 680
             +L
Sbjct: 1114 IKL 1116


>AF024499-2|AAT48621.1|  576|Caenorhabditis elegans Hypothetical
           protein F42G2.4b protein.
          Length = 576

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 170 WGCITDLSLIRRYFPLNTLNQVTNCHT*RDSVRINNDIWCYTF 42
           WGC  D+  I   F    +    N  T RD+V+I + I  Y +
Sbjct: 208 WGCAFDIKEIEHLFHFEKILITANKFTVRDAVKIRDKIMSYAY 250


>AF024499-1|AAT48620.1|  941|Caenorhabditis elegans Hypothetical
           protein F42G2.4a protein.
          Length = 941

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 170 WGCITDLSLIRRYFPLNTLNQVTNCHT*RDSVRINNDIWCYTF 42
           WGC  D+  I   F    +    N  T RD+V+I + I  Y +
Sbjct: 208 WGCAFDIKEIEHLFHFEKILITANKFTVRDAVKIRDKIMSYAY 250


>AF003144-5|AAV58874.1|  537|Caenorhabditis elegans Amino acid
           transporter protein5, isoform a protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 145 LLEDTFP*IHSIK*PIVIREGIA*GLIMISGVIPSQV 35
           L +D+FP +HS +  I+ R G A GL M+   +PS +
Sbjct: 493 LSDDSFPDLHSDEKNIMRRNGSAAGLKMLISSVPSSL 529


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical
           protein C13F10.4 protein.
          Length = 2076

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +3

Query: 87  SRMTIGHLIECIQGKVSSNKGEIGDATPFNDAVNVQKISSLLQDYG 224
           S +++G++ E +   + ++  +IGD  P ND+  +  +++ L  YG
Sbjct: 762 SSVSLGNIEEDLSNLIRASASQIGDTWPENDSEPLTCLNTALLTYG 807


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,531,212
Number of Sequences: 27780
Number of extensions: 385015
Number of successful extensions: 846
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)