Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0336
(746 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc fi... 23 2.3
AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein. 23 3.0
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 4.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 4.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.3
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 5.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.0
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 22 7.0
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 9.3
>AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc
finger domain-Z2 isoform protein.
Length = 71
Score = 23.4 bits (48), Expect = 2.3
Identities = 6/22 (27%), Positives = 15/22 (68%)
Frame = -1
Query: 575 FKCIVTQISYSDQAAEITHVYT 510
++C++ + Y + + +TH+YT
Sbjct: 36 YRCVICERVYCSRNSLMTHIYT 57
>AY588474-1|AAT94401.1| 104|Apis mellifera defensin 2 protein.
Length = 104
Score = 23.0 bits (47), Expect = 3.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 311 VVSWSQKNLRINFTAC 264
V+SW K L IN +AC
Sbjct: 66 VLSWQSKWLSINHSAC 81
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 22.6 bits (46), Expect = 4.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 66 INPHAIPSRMTIG 104
I P AIP+R+T+G
Sbjct: 237 IKPEAIPARVTLG 249
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 4.0
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN + +T LWL W +++W
Sbjct: 66 KNQLLITNLWLKLEWNDVNMRW 87
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T LW+ +W ++W
Sbjct: 71 KNQIMTTNLWVEQSWYDYKLRW 92
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T LW+ +W ++W
Sbjct: 71 KNQIMTTNLWVEQSWYDYKLRW 92
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 5.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T LW+ +W ++W
Sbjct: 67 KNQIMTTNLWVEQSWYDYKLKW 88
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T WL W ++QW
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQW 50
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T WL W ++QW
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQW 50
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T WL W ++QW
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQW 50
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T WL W ++QW
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQW 50
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T WL W ++QW
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQW 50
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T WL W ++QW
Sbjct: 29 KNQILTTNAWLKLEWVDYNLQW 50
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T WL W ++QW
Sbjct: 97 KNQILTTNAWLKLEWVDYNLQW 118
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 194 KNIISVTRLWLPSTW**SHVQW 259
KN I T WL W ++QW
Sbjct: 97 KNQILTTNAWLKLEWVDYNLQW 118
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 21.8 bits (44), Expect = 7.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 474 LRERLFEVSDPYRIHVCNFCG 536
LR E DPYR CN CG
Sbjct: 81 LRSHGKEGEDPYR---CNICG 98
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 9.3
Identities = 20/122 (16%), Positives = 49/122 (40%)
Frame = +1
Query: 133 YLLIRERSVMQPHSMML*MCKKYHLCYKIMVTIYVVMKSCTMGIQAVKLMRKFFWDQLTT 312
Y++IR +++ +++L LC + + T+GI + + F L +
Sbjct: 226 YIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLL--LVS 283
Query: 313 NV*STWSMIKFILELEVQYKF**DSLWKVGQEMVDYVLVKWNVIVRLHTELPNFYVNVYL 492
+ S++ ++ + + F + +V +++ WN +P ++L
Sbjct: 284 KILPPTSLVLPLIAKYLLFTF----IMNTVSILVTVIIINWNFRGPRTHRMPQLIRKIFL 339
Query: 493 KY 498
KY
Sbjct: 340 KY 341
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,227
Number of Sequences: 438
Number of extensions: 4986
Number of successful extensions: 24
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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