Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0335
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    28   1.8  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   5.6  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    26   7.4  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   9.8  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   9.8  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   9.8  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 558 TRDIITNKLRLRIDARLNFIWTHTRQR*RSTKTKFDDRLFL 436
           T+DII NK+   I A    +WTH  ++ +   +  DDR  L
Sbjct: 48  TKDIIENKVHGNILAATISLWTHAAEKHKEMSS--DDRALL 86


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
 Frame = +2

Query: 266 YQFTINIKELLRSVKLYCYVT---TKGNVHIYYQ---NLNSFFF*V-----ISSITVIFA 412
           ++  + +KE+L+++ L+C V     K    IYY    N+N  +  V     +  I   FA
Sbjct: 537 FEVALLVKEMLQALDLWCEVIEGYLKSPDDIYYTRDININHAWNVVTFDNEVRLIDASFA 596

Query: 413 AKSYPSAARKRRSSN-FVFV 469
           + ++P  A K  SSN F F+
Sbjct: 597 SPTHPQQALKSSSSNDFYFL 616


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -2

Query: 358 LIINMYITFCRNITI*FYTA*KLLYINSKLVIPIKD 251
           +I+N+ ++F    TI  +T  +LL+I+SKL   +++
Sbjct: 467 VILNVTLSFAGFFTIYLWTLGRLLHISSKLSTDLRN 502


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 417 NHIHRLQEKDDRQTS 461
           NH+H+L +KD+R T+
Sbjct: 46  NHVHKLIQKDERYTA 60


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 212 KTTLKNTPLSEKKI-LDRYYQFTINIKELLRSVKLYCYVTTK-GNVHIYYQNLNSF 373
           +T  +N+  + K+  +D Y Q  + I   L S KL   V ++  N HI+Y  LNSF
Sbjct: 429 QTPSENSAATLKQAAIDAYSQIPV-IPFFLPSDKLIMLVESEYRNKHIFYSLLNSF 483


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 749 RHFEDCSNFNAPFTLNIDSY 690
           +H ++C  FN P  + I+SY
Sbjct: 773 KHIQNCHKFNIPVVVAINSY 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,331
Number of Sequences: 5004
Number of extensions: 59945
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)