Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0335
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical pr...    33   0.25 
Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative tran...    28   7.0  

>Z93393-7|CAB07694.1|  383|Caenorhabditis elegans Hypothetical
           protein Y48E1B.8 protein.
          Length = 383

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 20/77 (25%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = -2

Query: 700 SILIYYALYFKLNLIL*TKSQKSIQR*VSVRHLPFDTSIMNFINAVINSRHYNK*IEIEN 521
           S++I+Y+ +F + L++  KSQ +++   +VR++   ++ ++ ++++  S  + + +E + 
Sbjct: 20  SLVIFYSFWFLIGLLVLRKSQNALE---AVRYVKAHSASVS-LDSLEGSTEFRQLLEEDF 75

Query: 520 *CPPKFY-LDAYATEMT 473
             PP F+ L+ YA  MT
Sbjct: 76  PRPPAFFLLNQYALNMT 92


>Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5a protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 173 LKCPCSRYVLLHQKTTLKNTPLSEKKI 253
           LKCPC    ++ Q+  L N  LS+KKI
Sbjct: 50  LKCPCRECTMVEQRRQLNNL-LSKKKI 75


>AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative
           transcription factor MAB-3 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 173 LKCPCSRYVLLHQKTTLKNTPLSEKKI 253
           LKCPC    ++ Q+  L N  LS+KKI
Sbjct: 50  LKCPCRECTMVEQRRQLNNL-LSKKKI 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,761,481
Number of Sequences: 27780
Number of extensions: 329278
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)