Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0334
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 169 2e-42
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 153 1e-37
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 153 1e-37
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 132 3e-31
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 128 3e-30
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 128 4e-30
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 107 6e-24
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 107 6e-24
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 107 6e-24
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 101 5e-22
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 97 9e-21
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 89 2e-18
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 85 5e-17
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 76 2e-14
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 73 2e-13
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 72 4e-13
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 70 2e-12
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 69 2e-12
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 67 1e-11
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 66 2e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 66 2e-11
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 65 4e-11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 64 8e-11
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 64 8e-11
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 63 2e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 62 4e-10
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 59 3e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 58 4e-09
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 55 3e-08
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 55 5e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 55 5e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 54 8e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 53 1e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 53 2e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 52 4e-07
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 50 1e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 50 2e-06
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 49 2e-06
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 49 2e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 49 3e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 48 4e-06
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 48 5e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 48 5e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 47 1e-05
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 47 1e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 46 2e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 46 2e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 2e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 46 2e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 3e-05
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 44 9e-05
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 44 9e-05
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 42 3e-04
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 40 0.001
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 38 0.004
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 38 0.007
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 36 0.017
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 34 0.070
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.12
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 33 0.21
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 32 0.28
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 31 0.65
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 31 0.65
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 31 0.86
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 2.0
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 29 3.5
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 3.5
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 4.6
At2g25460.1 68415.m03049 expressed protein 28 4.6
At5g22960.1 68418.m02684 serine carboxypeptidase S10 family prot... 28 6.1
At1g75850.1 68414.m08810 vacuolar protein sorting-associated pro... 28 6.1
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 8.0
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 8.0
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 27 8.0
At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative... 27 8.0
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 8.0
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 8.0
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 8.0
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 27 8.0
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 169 bits (410), Expect = 2e-42
Identities = 76/138 (55%), Positives = 99/138 (71%)
Frame = +1
Query: 229 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE 408
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 409 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN 588
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+TGSGKTL+Y+LPAIVH+N
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNA 163
Query: 589 QPPIRRGDGPIALVLAPT 642
QP + GDGPI LVLAPT
Sbjct: 164 QPMLAHGDGPIVLVLAPT 181
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 153 bits (371), Expect = 1e-37
Identities = 64/127 (50%), Positives = 94/127 (74%)
Frame = +1
Query: 262 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 441
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 442 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 621
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 622 ALVLAPT 642
L+LAPT
Sbjct: 241 VLILAPT 247
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 153 bits (371), Expect = 1e-37
Identities = 64/127 (50%), Positives = 94/127 (74%)
Frame = +1
Query: 262 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 441
+L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 442 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 621
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKTLAY+LPA+VH++ QP + + DGPI
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI 240
Query: 622 ALVLAPT 642
L+LAPT
Sbjct: 241 VLILAPT 247
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 132 bits (318), Expect = 3e-31
Identities = 54/132 (40%), Positives = 86/132 (65%)
Frame = +1
Query: 247 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 426
D S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 427 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 606
+ +K Y++PT IQ Q PI +SG++++G+A+TGSGKT A++LP IVHI +QP ++R
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQR 298
Query: 607 GDGPIALVLAPT 642
+GPI ++ APT
Sbjct: 299 DEGPIGVICAPT 310
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 128 bits (309), Expect = 3e-30
Identities = 57/132 (43%), Positives = 82/132 (62%)
Frame = +1
Query: 247 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 426
D + +PF KNFY + + + V YR E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 427 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 606
+ +K + Y++P PIQAQ PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 466
Query: 607 GDGPIALVLAPT 642
GDGPI LV+APT
Sbjct: 467 GDGPIGLVMAPT 478
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 128 bits (308), Expect = 4e-30
Identities = 56/132 (42%), Positives = 82/132 (62%)
Frame = +1
Query: 247 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 426
D + +PF KNFY + + + EV YR E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 427 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRR 606
+ +K + Y++P PIQ Q PI MSG++ +GVA+TGSGKTL ++LP + HI +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEA 599
Query: 607 GDGPIALVLAPT 642
GDGPI LV+APT
Sbjct: 600 GDGPIGLVMAPT 611
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 107 bits (257), Expect = 6e-24
Identities = 52/116 (44%), Positives = 70/116 (60%)
Frame = +1
Query: 295 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 474
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 475 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 642
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PT
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPT 239
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 107 bits (257), Expect = 6e-24
Identities = 52/116 (44%), Positives = 70/116 (60%)
Frame = +1
Query: 295 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 474
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 475 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 642
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PT
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPT 239
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 107 bits (257), Expect = 6e-24
Identities = 52/116 (44%), Positives = 70/116 (60%)
Frame = +1
Query: 295 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 474
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 475 QAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 642
QAQ WPIAM G+++V +A+TGSGKTL Y++P +H+ R GP LVL+PT
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPT 239
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 101 bits (241), Expect = 5e-22
Identities = 52/126 (41%), Positives = 75/126 (59%), Gaps = 4/126 (3%)
Frame = +1
Query: 277 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 444
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 445 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 624
+ G+ PTPIQAQ WPIA+ +++V +A+TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 625 LVLAPT 642
L+LAPT
Sbjct: 511 LILAPT 516
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 97.1 bits (231), Expect = 9e-21
Identities = 47/122 (38%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Frame = +1
Query: 286 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 465
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 466 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLA 636
TPIQ QG P+ +SG++++G+A TGSGKTL ++LP I+ + PI G+GPIALV+
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVIC 180
Query: 637 PT 642
P+
Sbjct: 181 PS 182
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 89.0 bits (211), Expect = 2e-18
Identities = 43/121 (35%), Positives = 72/121 (59%), Gaps = 3/121 (2%)
Frame = +1
Query: 289 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 468
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 469 PIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAP 639
PIQ QG P+ ++G++++G+A TGSGKTL ++LP I+ + PI G+GPI L++ P
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCP 230
Query: 640 T 642
+
Sbjct: 231 S 231
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 84.6 bits (200), Expect = 5e-17
Identities = 35/104 (33%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Frame = +1
Query: 340 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 519
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 520 GVAQTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPT 642
G+A+TGSGKT A++LP + +I+ PP+ +GP A+V+APT
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPT 398
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 76.2 bits (179), Expect = 2e-14
Identities = 44/111 (39%), Positives = 66/111 (59%), Gaps = 6/111 (5%)
Frame = +1
Query: 328 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 501
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 502 SGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPT 642
G++L+G+A+TGSGKTLA+ +PAI+H+ I G P LVL+PT
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPT 200
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 72.9 bits (171), Expect = 2e-13
Identities = 33/68 (48%), Positives = 46/68 (67%)
Frame = +1
Query: 439 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGP 618
V + G+ P+PIQAQ WPIAM +++V +A+TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSR-MGP 302
Query: 619 IALVLAPT 642
LVL+PT
Sbjct: 303 TILVLSPT 310
Score = 31.1 bits (67), Expect = 0.65
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 334 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 423
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 71.7 bits (168), Expect = 4e-13
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 8/145 (5%)
Frame = +1
Query: 232 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYF 402
N R WD + PF + +P P ++ + + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 403 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 582
E + + + ++ Y +PTP+Q PI + G++L+ AQTGSGKT A+ P I I
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGI 221
Query: 583 NNQPPIRRGDG-----PIALVLAPT 642
++R G P+A++L+PT
Sbjct: 222 MKDQHVQRPRGSRTVYPLAVILSPT 246
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 69.7 bits (163), Expect = 2e-12
Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 8/145 (5%)
Frame = +1
Query: 232 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 402
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 403 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 582
E + + + ++ Y +PTP+Q PI +G++L+ AQTGSGKT A+ P I I
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGI 208
Query: 583 NNQPPIRRGDG-----PIALVLAPT 642
I R G P+A++L+PT
Sbjct: 209 MKDQHIERPRGVRGVYPLAVILSPT 233
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 69.3 bits (162), Expect = 2e-12
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Frame = +1
Query: 319 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 492
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 493 IAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPT 642
A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPT
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPT 195
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 66.9 bits (156), Expect = 1e-11
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Frame = +1
Query: 343 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 510
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 511 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAP 639
A TGSGKT A+I P ++ + DG A++L+P
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSP 218
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 66.1 bits (154), Expect = 2e-11
Identities = 38/94 (40%), Positives = 54/94 (57%)
Frame = +1
Query: 361 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 540
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 541 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 642
GKT A+ LP + + +P +R L+L PT
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPT 247
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/81 (41%), Positives = 50/81 (61%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 580 INNQPPIRRGDGPIALVLAPT 642
+ P +G G AL+L+PT
Sbjct: 90 LKQHVP--QG-GVRALILSPT 107
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 64.9 bits (151), Expect = 4e-11
Identities = 29/66 (43%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +1
Query: 448 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 624
MG++ PT +QAQ P+ +SG++++ A TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 625 LVLAPT 642
LV+ PT
Sbjct: 108 LVIVPT 113
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.1 bits (149), Expect = 8e-11
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Frame = +1
Query: 232 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 402
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 403 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 582
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 583 NNQPPIRRGDG-----PIALVLAPT 642
+ R G P A++L+PT
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPT 238
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.1 bits (149), Expect = 8e-11
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Frame = +1
Query: 232 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYF 402
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 403 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI 582
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT A+ P I I
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGI 213
Query: 583 NNQPPIRRGDG-----PIALVLAPT 642
+ R G P A++L+PT
Sbjct: 214 MKDQHVERPRGSRAVYPFAVILSPT 238
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 62.9 bits (146), Expect = 2e-10
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Frame = +1
Query: 328 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 507
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 508 KNLVGVAQTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPT 642
K++V A+TGSGKTLAY+LP + + + + ++ P A +L P+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPS 129
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 61.7 bits (143), Expect = 4e-10
Identities = 38/125 (30%), Positives = 62/125 (49%)
Frame = +1
Query: 268 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 447
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 448 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 627
MG+ T IQA+ P M G++++G A+TGSGKTLA+++PA V + + +G L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVL 230
Query: 628 VLAPT 642
V+ PT
Sbjct: 231 VICPT 235
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
FE ++ + K +G ++PTP+Q P ++G++++G+AQTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 580 INNQPPIRRGDGPIALVLAPT 642
+ P G ALV+ PT
Sbjct: 119 RLAEDPY----GVFALVVTPT 135
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Frame = +1
Query: 376 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 555
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTGSGKT A
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGA 62
Query: 556 YILPAIVHI-----NNQPPIRRGDGP--IALVLAPT 642
+ +P + + +++P R P A VL+PT
Sbjct: 63 FAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPT 98
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/84 (29%), Positives = 51/84 (60%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 570
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 571 IVHINNQPPIRRGDGPIALVLAPT 642
+ ++ + DG ++++PT
Sbjct: 130 LEKLHRE-RWSPEDGVGCIIISPT 152
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 54.8 bits (126), Expect = 5e-08
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Frame = +1
Query: 364 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 543
V VEV NP + +++ +K G + PIQA + + + G +LVG A+TG G
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQG 145
Query: 544 KTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPT 642
KTLA++LP + + N P + G P LVL PT
Sbjct: 146 KTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPT 183
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
F++ +G++ G+K T +Q P+ + GK+++ A+TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 580 INNQPPIRRGDGP---IALVLAPT 642
+ PP R + I LV+ PT
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPT 165
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = +1
Query: 433 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 612
+ +K G++ T +Q PI + GK+++ A+TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 613 GP---IALVLAPT 642
I LV+ PT
Sbjct: 455 RQPPIIVLVVCPT 467
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 53.2 bits (122), Expect = 1e-07
Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +1
Query: 433 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGD 612
+ +K GY+ T +Q PI + GK+++ A+TG+GKT+A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 613 --GPI-ALVLAPT 642
PI ALV+ PT
Sbjct: 127 KRPPILALVICPT 139
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Frame = +1
Query: 331 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 510
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 511 NLVGVAQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPT 642
+++G A+TGSGKTLA+++PA+ + + R G G +V+ PT
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPT 170
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
FEE PD + ++ G+ PT +Q+ P + G + V + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 580 I 582
I
Sbjct: 172 I 172
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 50.0 bits (114), Expect = 1e-06
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 427 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 603
+ + + + G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 604 RGDGPIALVLAPT 642
RG P+ LVLAPT
Sbjct: 175 RGRNPLCLVLAPT 187
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = +1
Query: 391 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 570
++ F+E + V ++ + + PT IQ G P M K++V + TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP- 169
Query: 571 IVHINNQPPIRRGD-----GPIALVLAPT 642
IV + + G P +VL PT
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPT 198
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 580 IN 585
I+
Sbjct: 193 ID 194
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/62 (32%), Positives = 39/62 (62%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 580 IN 585
I+
Sbjct: 193 ID 194
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 427 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH-INNQPPIR 603
+ + +K G ++ PIQ AM G++++G A+TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 604 RGDGPIALVLAPT 642
RG P LVLAPT
Sbjct: 187 RGKNPQCLVLAPT 199
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/81 (29%), Positives = 49/81 (60%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 580 INNQPPIRRGDGPIALVLAPT 642
I+ + + + A++L PT
Sbjct: 216 IDPENNVIQ-----AVILVPT 231
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/81 (29%), Positives = 48/81 (59%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 580 INNQPPIRRGDGPIALVLAPT 642
I+ + + A++L PT
Sbjct: 186 IDPNNNVIQ-----AMILVPT 201
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/81 (29%), Positives = 48/81 (59%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 580 INNQPPIRRGDGPIALVLAPT 642
I+ + + A++L PT
Sbjct: 186 IDPNNNVIQ-----AMILVPT 201
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = +1
Query: 418 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 591
P+++ ++ +G+ PT IQ + P +G++ + AQTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ 141
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Frame = +1
Query: 388 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--LAYI 561
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 562 LPAIVHINNQ 591
+ IV+I+++
Sbjct: 80 VCQIVNISSR 89
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
F E + + + +K + P IQA + + GK+ + Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 580 INN---QPPIRRGDG-PIALVLAPT 642
+ Q + G P +VL PT
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPT 460
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Frame = +1
Query: 481 QGWPIAMSGKNLVGVAQTGSGKTLAYILPAI---VHINNQPPIRRGDGPIALVLAPT 642
Q P A++GK+L+ A TGSGKT ++++P I +++ P + P+A+VLAPT
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPT 58
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Frame = +1
Query: 451 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 621
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 622 ALVLAPT 642
++++PT
Sbjct: 93 GVIISPT 99
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Frame = +1
Query: 451 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 621
G++ TP+QA+ P S K++V A TGSGKTLA++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 622 ALVLAPT 642
++++PT
Sbjct: 94 GVIISPT 100
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +1
Query: 427 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAI 573
+ + + + +KEPT IQ + +A GK+++G A+TGSGKTLA+ LP +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 44.0 bits (99), Expect = 9e-05
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Frame = +1
Query: 346 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS--GKNL 516
+N + SG + FE+ N + +G+ M +++P+ IQA P+ M+ K+L
Sbjct: 75 SNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHL 134
Query: 517 VGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPT 642
+ A GSGKT ++L + ++ P +R P AL + PT
Sbjct: 135 IAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPT 171
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 421 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINN 588
D V ++ G+ P+ QA P +SGK+++ A+TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Frame = +1
Query: 412 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 591
+ P +++ ++ G PIQ A+ G++++ A+TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 592 ----PPIRR-GDGPIALVLAPT 642
RR G P LVLAPT
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPT 189
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +1
Query: 361 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 540
T G+E PI F + + V +GV G+++P+ IQ + + G++++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 541 GKT 549
GKT
Sbjct: 84 GKT 86
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1
Query: 466 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAI 573
TP+QA P+ S K++ A TGSGKTLA+++P +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 37.5 bits (83), Expect = 0.007
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 579
F+E+ + + G + T +Q + GK+ + A+TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 580 I----NNQPPIRRGDGPIALVLAPT 642
+ N+ + + AL+L PT
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPT 414
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 36.3 bits (80), Expect = 0.017
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Frame = +1
Query: 277 NKNFYDPH---PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 438
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 439 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHI----NNQPPIRR 606
+ G + T +Q + GK+ + A+TG+GK++A++LPAI + N+ + +
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHK 449
Query: 607 GDGPIALVLAPT 642
L+L PT
Sbjct: 450 VAPIFVLILCPT 461
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 34.3 bits (75), Expect = 0.070
Identities = 17/61 (27%), Positives = 34/61 (55%)
Frame = +1
Query: 376 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLA 555
EVH + F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 556 Y 558
+
Sbjct: 93 F 93
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +1
Query: 400 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAY 558
F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 427 VQQGVKTMGYKEPTPIQAQGW--PIAMSG--KNLVGVAQTGSGKTLAYILPAIVHINNQP 594
+++ ++ MG P+Q W I G +++ + TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 595 PIR 603
P+R
Sbjct: 91 PVR 93
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +1
Query: 418 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAY 558
PD ++ G+ G+++P+ IQ +G G +++ AQ+G+GKT +
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATF 95
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 430 QQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILP 567
+ +K +G QA+ A++GKN+ T SGK+L Y +P
Sbjct: 383 KSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.1 bits (67), Expect = 0.65
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = +1
Query: 382 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYI 561
H Y E D + G K P+Q Q +M K+ + TG GK+L Y
Sbjct: 180 HETPSYEELQALDDLEFANLVIFGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQ 239
Query: 562 LPA 570
LPA
Sbjct: 240 LPA 242
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 30.7 bits (66), Expect = 0.86
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 442 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 576
K G P Q + MSG ++ + TG GK+L Y LPA++
Sbjct: 447 KVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALI 491
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 451 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIV 576
GY Q Q + + G + + V TG+GK+L Y +PA++
Sbjct: 266 GYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI 307
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 28.7 bits (61), Expect = 3.5
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = +1
Query: 301 PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEE---ANFPDYVQQGVKTMGYKEP-- 465
P + K SP ++ E N V + +EV P + A P+ ++ K G E
Sbjct: 429 PGMGKVSPAQIREAEKNLLVMEAMIEVMTPEERERPELLAESPERRKRIAKDSGKTEQQV 488
Query: 466 TPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPP 597
+ + AQ + + + KNL+GV + GS L+ + A+ PP
Sbjct: 489 SALVAQIFQMRVKMKNLMGVMEGGSIPALSGLEDALKAEQKAPP 532
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 3.5
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 249 IWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKF-GTTVSTAIIPVTRH- 76
+W VL + F F K R ++S A +R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 75 -DYFSDLVEDVYLNYGFFLTQGPP 7
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 210 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 31
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 4.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 157 EKNYRRICCLLQIWNHRFHGYY 92
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At5g22960.1 68418.m02684 serine carboxypeptidase S10 family protein
similar to serine carboxypeptidase III [Precursor]
(SP:P37891) [Oryza sativa]
Length = 190
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 241 RPDWDSVS--LQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHN 387
R D DSVS L F + F+ HP + K Y E H + VHN
Sbjct: 111 RHDEDSVSNDLYDFLQAFFKEHPNLAKDDFYITGESYAGHYIPALASRVHN 161
>At1g75850.1 68414.m08810 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 838
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +2
Query: 119 NLEEATN-SAIILLDLATVAIDLEDLEDLVG----KKNSLEVRTCVAQIGILFRSNLSTK 283
NL E SA++L +L T + + DL + +L + CV Q I+F SNL +
Sbjct: 36 NLREVLKYSALMLSELRTSKLSPQKYYDLCRFHRQRTLNLSIHACVDQFLIIFPSNLDMR 95
Query: 284 TF 289
F
Sbjct: 96 AF 97
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 232 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 399
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 400 FEE 408
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +1
Query: 232 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYRNNH--EVTVSGVEVHNPIQY 399
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 400 FEE 408
EE
Sbjct: 811 NEE 813
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 182 LEDLEDLVGKKNSLEVRTCVAQIGILFRSNLSTKTFMIH 298
+ D++ +GK V C A++G+ F S +T M H
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPH 568
>At2g03210.1 68415.m00274 xyloglucan fucosyltransferase, putative
(FUT2) identical to SP|O81053 Probable
fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2) {Arabidopsis
thaliana}; similar to xyloglucan fucosyltransferase
GI:5231145 from [Arabidopsis thaliana]
Length = 539
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 501 VWKEFSWRSPNGFRQNVGLHLASHCAHKQ--PTAYSER*WSDCF 626
+ K W +P R +G+H SH H+Q ++ + W++ +
Sbjct: 403 ILKTMYWENPTVTRDVIGIHQPSHEGHQQTEKLMHNRKAWAEMY 446
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 289 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 465
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 466 TPIQAQGWPIAMS 504
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 289 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 465
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 466 TPIQAQGWPIAMS 504
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +1
Query: 289 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 465
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 466 TPIQAQGWPIAMS 504
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 499 MSGKNLVGVAQTGSGKTLAYILPAIV 576
M+G++++ + G GK+L Y LPA++
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAML 127
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.134 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,751
Number of Sequences: 28952
Number of extensions: 284461
Number of successful extensions: 734
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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