Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0333
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0415 + 3292576-3293727                                           30   1.8  
11_01_0407 + 3090880-3092010                                           30   1.8  
10_02_0194 + 6552638-6552895,6553088-6553246,6553551-6553702,655...    27   9.6  
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882...    27   9.6  

>12_01_0415 + 3292576-3293727
          Length = 383

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 457 VATPRVQIHLSSLAGVDFSQPCTMSISCWAIVSSAPC 347
           +A PR   H + LA   ++  C + +  WA+V++ PC
Sbjct: 219 LAAPRA--HEAGLAAPVYAMGCVLHLVAWALVAAVPC 253


>11_01_0407 + 3090880-3092010
          Length = 376

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 457 VATPRVQIHLSSLAGVDFSQPCTMSISCWAIVSSAPC 347
           +A PR   H   L    +S  C + ++ WA+V++ PC
Sbjct: 212 LAAPRA--HEGGLVAPVYSMGCLLHLAAWALVAAVPC 246


>10_02_0194 +
           6552638-6552895,6553088-6553246,6553551-6553702,
           6553741-6553804
          Length = 210

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 496 GAQFNLWISALKQVATPRVQIHLSSLAGVDFSQPCTMSISCWAIVSS 356
           G   +LW S L+     + +   + L G  F    +++ +CW +V S
Sbjct: 41  GKSLHLWNSILQHQKEQQTKSATNQLRGTIFLAGSSLTFACWYLVQS 87


>07_03_1400 +
           26287124-26287298,26287925-26288007,26288141-26288270,
           26288369-26288442,26288797-26288883,26288976-26289100,
           26289232-26289292,26289606-26289683,26289785-26289890,
           26289978-26290123,26290264-26290380
          Length = 393

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 214 ISGKRDMKLKTGRLDAL*CAFPPS*TCSTLKETFITET---LWSLPRNMEPMRRWP 372
           +SG+R+M+     +  L C FP +   +    TFI  T   +W L +++ P R  P
Sbjct: 228 VSGQREMRDFFNGIVRLQCFFPQNVVPNIQTPTFILNTAYDVWQLQQSVAPKRADP 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,600
Number of Sequences: 37544
Number of extensions: 358831
Number of successful extensions: 775
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)