Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0333
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05990.1 68414.m00627 calcium-binding protein, putative stron...    31   0.65 
At2g24140.1 68415.m02884 expressed protein contains Pfam PF04576...    28   6.1  
At5g49555.1 68418.m06133 amine oxidase-related contains Pfam pro...    27   8.0  

>At1g05990.1 68414.m00627 calcium-binding protein, putative strong
           similarity to calcium-binding protein [Lotus japonicus]
           GI:18413495; contains INTERPRO:IPR002048 calcium-binding
           EF-hand domain
          Length = 150

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 99  SVDASQEVMKNLSLNFGKALDECKKEMTLTDAINEDFYNF 218
           +VD  + V+ +L L  GK LD+CKK +   D   +   N+
Sbjct: 96  TVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNY 135


>At2g24140.1 68415.m02884 expressed protein contains Pfam PF04576:
           Protein of unknown function, DUF593
          Length = 273

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +3

Query: 99  SVDASQEVMKNLSLNFG--KALDECKKEMT-LTDAINEDFYNFWKEGYEIKNRETGCAIM 269
           S+D+ ++  KNL LN+   K +DE  KE+T   D++ + +    +E   +   + G   M
Sbjct: 105 SLDSRRDHEKNLDLNWEKIKKVDEQLKELTDFRDSVRDQYKILKQETTSVSETKNGEKGM 164

Query: 270 C 272
           C
Sbjct: 165 C 165


>At5g49555.1 68418.m06133 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 556

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 222 KEGYEIKNRETGCAIMCLSTKLNMLDPEGNLHHGNAMEFAKKHGAD 359
           + G ++  R       CL  +  +L P+ +L+H    +F+ KH AD
Sbjct: 85  RHGLKLLKRSPSSFTPCLDGRYLLLGPDQDLNHSEISKFS-KHDAD 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,081,125
Number of Sequences: 28952
Number of extensions: 291056
Number of successful extensions: 709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)