Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0324
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)                  31   0.80 
SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)               31   1.4  
SB_57561| Best HMM Match : fn3 (HMM E-Value=0)                         30   1.8  
SB_33015| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    30   1.8  
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)                   30   2.4  
SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)                   30   2.4  
SB_4827| Best HMM Match : RCSD (HMM E-Value=1.7)                       29   3.2  
SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_47500| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-28)                 29   5.6  
SB_52519| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-08)                 29   5.6  
SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)                  29   5.6  
SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_51012| Best HMM Match : 7tm_1 (HMM E-Value=2e-06)                   28   9.8  
SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_27959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 373

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +1

Query: 406 VCVHGRNTETHGTIRIHNHGGDRAQVALWNYTARHQSFFLQILHV*SWPGTFYKSRYGHT 585
           +C +G     +G I +   G    +   WN T  H        H+ S P T+++ R GH 
Sbjct: 284 LCFNGTGEHYNGNISVTEKGFGCQR---WNVTTPH-------FHLMS-PATYHELRGGHN 332

Query: 586 FCRNPASRSHK 618
           +CRNP  +  +
Sbjct: 333 YCRNPGGKKQR 343


>SB_46013| Best HMM Match : DUF1129 (HMM E-Value=0.23)
          Length = 553

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +2

Query: 125 AVITKMNGHTNGINAVQSQATCSRNPHRRTFDNDDEFQETDGTPVGADDNSVRYPDGTVR 304
           A+  + N   N  N V+  A+C  +     +DND+   + D + +  +DNS+   D ++ 
Sbjct: 250 AIAARKNNDNN--NRVKGAASCIYDNDNSIYDNDNSINDNDNS-INDNDNSINDNDNSIY 306

Query: 305 LRNPNIELMDQDI 343
             + +I   D  I
Sbjct: 307 DNDNSINDNDNSI 319


>SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 191 SRNPHRRTFDNDDEFQETDGTPVGADDNSVRYPDGTVRLRNPNIELMDQDIL 346
           +R P RRT + +   +  D T  G       Y D   R+  PN E  +QD+L
Sbjct: 173 ARIPIRRTLEGNRITEVNDNTFNGVKSLETLYLDSLQRIGAPNYEATEQDLL 224


>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
          Length = 722

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 311 NPNIELMDQDILYHLALGSGSHDLVEMFGD 400
           +PN E+M  D+  H +    +H+L E+ GD
Sbjct: 249 HPNYEIMSSDLTDHSSADEATHELYEVMGD 278


>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1614

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +3

Query: 246  MELL*EPTTIPLDTQMALSDCVTLTLNSWTKIFSTI-WPLGAAPMILLRCLETSSLCAWA 422
            + L  +P  IP    + L   V + LN  +   ST+ W     P   +  LE   L AW 
Sbjct: 878  LSLTWQPVPIPQRNGIILGYTVNIRLNDTSLDNSTLLWNTTVLPDAAILSLEVPGLAAWT 937

Query: 423  EHR 431
             HR
Sbjct: 938  AHR 940


>SB_33015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +2

Query: 191 SRNPHRRTFDNDDEFQETDGTPVGADDNSVRYPDGTVRLRNPNIELMDQDILYHL 355
           SR P  +  DN  E +          ++SVR   GT RL N N  L +    YHL
Sbjct: 141 SRTPFAKFADNVREIRGQCSRTADVREHSVREQSGTNRLTNGNSYLTNPGDRYHL 195


>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 209 RTFDNDDEFQETDGTPVGADDNSVRYPDGTV 301
           R +DN++ ++E   TP    ++S+ YP+G V
Sbjct: 125 RYYDNNNTYEEPSLTPAALPESSLTYPNGPV 155


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 209  RTFDNDDEFQETDGTPVGADDNSVRYPDGTV 301
            R +DN++ ++E   TP    ++S+ YP+G V
Sbjct: 1706 RYYDNNNTYEEPSLTPAALPESSLTYPNGPV 1736


>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
          Length = 857

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 342 ISWSMSSMLGLRNRTVPSGYLTELSSAPTGV 250
           ++W  S  +GL   TVPS YL  + S P G+
Sbjct: 125 LTWQHSECVGLTELTVPSKYLCYVCSNPKGL 155


>SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)
          Length = 626

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +2

Query: 197 NPHRRTFDNDDEFQETDGTPVGADDNSVRYPDGTVRLRNPNIELMDQ 337
           NPH R    +D   ET+   VGAD   VRY D    L+ P I+ + Q
Sbjct: 471 NPHWREDLREDLHDETN-PEVGADVQVVRYDDYDPELKEPAIKTVLQ 516


>SB_4827| Best HMM Match : RCSD (HMM E-Value=1.7)
          Length = 269

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 131 ITKMNGHTNGINAVQSQATCSRNPHRRTFDNDDEFQETDGTPV 259
           +    GH++G N + SQ   +RN   R  + +++ + +DG  V
Sbjct: 137 VRSSRGHSHGANELGSQPIVTRNSFNRKGNYNEQHRRSDGADV 179


>SB_31412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 173 QSQATCSRNPHRRTFDNDDEFQETD---GTPVGADDNSVRYPDGTV 301
           + +A+  RN  R+ FD+D+E Q  D   G P+ A+    + P   +
Sbjct: 6   RKKASAKRNLRRKNFDDDEETQNDDPGEGEPMEAETFGPKIPKANI 51


>SB_47500| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-28)
          Length = 961

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 224 DDEFQETDGTPVGADDNSVRYPDGTVRLRNPNIELMDQDI 343
           DDE   TD   +G DD  VR  D  VR  +  +   D+ +
Sbjct: 834 DDEGVRTDDEGLGTDDKGVRTDDEGVRTDDEGVRTDDEGV 873


>SB_52519| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-08)
          Length = 304

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 264 PTTIPLDTQMALSDC--VTLTLNSWTKIFSTIWPL 362
           P + P+ T + L+     TLTL S  ++F+T+WPL
Sbjct: 102 PLSAPIRTFVVLTGVHLFTLTLISLERMFATVWPL 136


>SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)
          Length = 549

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 512 SHFSYRYSMYKVGPVLSISHGM-GIPSVGILLHEVIKLMY 628
           +H   ++ ++ VGP++S  HG+  +P V + LH + + ++
Sbjct: 478 NHLGLKFCVFFVGPLISREHGLRSMPHVVLALHVLCERLH 517


>SB_44858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 122 VAVITKMNGHTNGINAVQSQATCSRNPHRRTFDNDDEFQETD 247
           VA I K+NGH   I   +S A    +    T+D D+EF + +
Sbjct: 204 VAEIKKINGHMMAIKRQKSDAD-GESLASSTYDTDEEFSDEE 244


>SB_51012| Best HMM Match : 7tm_1 (HMM E-Value=2e-06)
          Length = 457

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 329 MDQDILYHLALGSGSHDLVEMFGDVKFVC 415
           +  + L H+AL   S +L+ M+  V+FVC
Sbjct: 12  LGNESLSHIALSENSTNLIRMYRRVEFVC 40


>SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 316 RVTQSDSAIWVSNGIVVGSYRSSIGFL-KFVVVIKCPS 206
           R+ QS S+ W    IV+   R S+GFL  FV+ ++C S
Sbjct: 107 RLFQSISSFWYIVFIVLVRDRGSLGFLILFVISLQCTS 144


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +3

Query: 273 IPLDTQMALSDCVTLTLNSWTKIFSTIWPLGAAPMILLRCLETSSLCAWAEHRNAWNNSH 452
           I +    +LS     +  +W +  S  W   ++     +    +SL AW+E+  A N + 
Sbjct: 585 ITIQATCSLSAWNETSTGTWNETSSKAWNENSS-----KAWNETSLAAWSEYVTALNKTA 639

Query: 453 TQSWRR*GTS 482
           T +W    TS
Sbjct: 640 TGAWNEPSTS 649


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,761,295
Number of Sequences: 59808
Number of extensions: 619168
Number of successful extensions: 1799
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)