Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0324
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP]...    29   2.6  
At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa...    29   3.5  
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ...    28   6.1  
At5g65690.1 68418.m08266 phosphoenolpyruvate carboxykinase [ATP]...    28   8.0  
At3g54710.1 68416.m06053 expressed protein                             28   8.0  
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa...    28   8.0  

>At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP],
           putative / PEP carboxykinase, putative / PEPCK, putative
           similar to phosphoenolpyruvate carboxykinase
           [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
           Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
           (PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
           (PEPCK) {Zea mays}; contains Pfam profile PF01293:
           phosphoenolpyruvate carboxykinase
          Length = 671

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = -1

Query: 610 FVKQDSDRRY-AHTVTYRKYRANFIHGVSVRKMTDVLQCSSTRQLVPYLRHDCVCELFHA 434
           ++  D + R     V+ R Y + F+H + +R   + L+   T     Y      C  +  
Sbjct: 245 YLNWDPENRIKVRIVSARAYHSLFMHNMCIRPTQEELESFGTPDFTIYNAGQFPCNRYTH 304

Query: 433 FRCSAHAHKLDVSKHLNKIMGAAPKGQMVENI 338
           +  S+ +  L++++    I+G    G+M + +
Sbjct: 305 YMTSSTSVDLNLARREMVILGTQYAGEMKKGL 336


>At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF01485:IBR domain
          Length = 384

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 4   CRSLTTFAQLHRVFSKRRCVV*LSDLFASKVIISWIGLFSCCYYK 138
           C +L +  +L ++   +RC V   + F  K  + W    SC  YK
Sbjct: 245 CSALMSVTELDQLTGSKRCCVKCGESFCIKCKVPWHDNLSCKRYK 289


>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425
          Length = 695

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 433 FRCSAHAHKLDVSKHLNKIMGAAPKGQMVENILVHEFNVRVTQSD 299
           FRC    + +D SKHL  + G+A KG++V   LV + N   +  D
Sbjct: 74  FRCH---NSVDRSKHLESLDGSAVKGEVVVP-LVEDLNKEASLED 114


>At5g65690.1 68418.m08266 phosphoenolpyruvate carboxykinase [ATP],
           putative / PEP carboxykinase, putative / PEPCK, putative
           similar to phosphoenolpyruvate carboxykinase
           [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
           Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
           (PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
           (PEPCK) {Zea mays}; contains Pfam profile PF01293:
           phosphoenolpyruvate carboxykinase
          Length = 670

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/78 (20%), Positives = 34/78 (43%)
 Frame = -1

Query: 571 VTYRKYRANFIHGVSVRKMTDVLQCSSTRQLVPYLRHDCVCELFHAFRCSAHAHKLDVSK 392
           V+ R Y + F+H + +R   + L+   T     Y      C  F  +  S+ +  +++ +
Sbjct: 258 VSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGKFPCNRFTHYMTSSTSVDINLGR 317

Query: 391 HLNKIMGAAPKGQMVENI 338
               I+G    G+M + +
Sbjct: 318 REMVILGTQYAGEMKKGL 335


>At3g54710.1 68416.m06053 expressed protein
          Length = 486

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 251 TPVGADDNSVRYPDGTVR--LRNPNIELMDQDILYHLALGSGSHD 379
           TP G DDNS+R  +   R   R+ N +  ++D +    +G+ S D
Sbjct: 272 TPEGGDDNSLRSTNSLARGPSRSLNFDTFEEDAIEKDDIGNESDD 316


>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 398

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 4   CRSLTTFAQLHRV-FSKRRCVV*LSDLFASKVIISWIGLFSCCYYKNERPH 153
           C +L +  +L  +    RRC V   + F  K  +SW    SC  YK   P+
Sbjct: 251 CSTLMSETELSGLNIGVRRCCVKCGEPFCVKCKVSWHNNLSCDEYKTLHPN 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,166,960
Number of Sequences: 28952
Number of extensions: 408898
Number of successful extensions: 1130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)