Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0323
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    31   0.21 
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    28   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    27   2.0  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   4.6  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   6.1  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.0  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   8.0  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 9   DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 131
           +K+  VV EK   P  + T     E  PSE Y+  EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 324 DALVADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQ 503
           D  V+DE   L   +A + +   L   + E  +P   + S FK+    H ++KI +++L 
Sbjct: 801 DTFVSDELNSLCATNAYNRISTFLRMQIDEECKPCQFKKSNFKE----HFQNKIYQEQLD 856

Query: 504 KI 509
           K+
Sbjct: 857 KL 858


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 48  PDSMATITMKPEYPPSEVYSTSEPPP 125
           P   +T  + P  PP+   STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 48  PDSMATITMKPEYPPSEVYSTSEPPP 125
           P   +T  + P  PP+   STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 357 ANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINEDKLQKI 509
           + A  ++ +PP  SSV   T+ P+S   S+  D  LN  E+ + E K  +I
Sbjct: 77  SEAPRINEIPPSTSSVEKSTTIPNS---SVVLDHLLNEGENTLEEVKPSEI 124


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 36  KEHQPDSMATITMKPEYPPSEVYSTS 113
           + +  DS +TI  +PEYPP   +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 81  EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARS 248
           E+    + + S  PP  + + STSV  A   A+ +V S+  LG+    +S  A ++
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGSLSTNTSSTAQKN 270


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 115 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 26
           S V    +G Y+GFIV++A+ S    F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 45  QPDSMATITMKPEYPPSEVYSTSEPP 122
           QP + +T+   P  PPS  Y+T++PP
Sbjct: 86  QPGNASTMYASP--PPSSNYNTAKPP 109


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 179 NSGRF-LLHLGNLYIGFELGSSSFIMPSARAAGCNARQRTRFGRQSL 316
           NS R  +L L  LY+GF    S  ++   +A     R++ RFG++ +
Sbjct: 6   NSPRLNILELVLLYVGFFSIGSLNLLQKRKATSDPYRRKNRFGKEPI 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,987
Number of Sequences: 5004
Number of extensions: 53635
Number of successful extensions: 188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)