Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0323
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1450 + 26620178-26620456,26622122-26622775 31 0.90
01_03_0285 - 14604499-14604608,14604692-14605203,14605339-146054... 30 1.6
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 30 2.1
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638 29 2.7
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 29 2.7
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 3.6
12_02_1197 + 26915933-26916298 28 6.3
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 28 6.3
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 8.4
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 8.4
01_06_1486 - 37709159-37709377,37709558-37709821,37709903-377099... 28 8.4
>07_03_1450 + 26620178-26620456,26622122-26622775
Length = 310
Score = 31.1 bits (67), Expect = 0.90
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 12/125 (9%)
Frame = +3
Query: 102 YSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAARSSCHQLEQLDAM 281
+S PPPAY H + A A TV G F+ A S QL + +++
Sbjct: 148 FSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALS-----EDNRQLRRRNSL 202
Query: 282 LDKELALEGRAYGNDAL------------VADEPLPLANAHALHGVPPMLSSVLPETSQP 425
L ELA + Y ND + P A A A H +P S L E P
Sbjct: 203 LLSELAHMKKLY-NDIIYFLQNHVAPVTTTTTTPSSTAMAAAQHHLPAAASCRLMELDSP 261
Query: 426 SSSRP 440
S P
Sbjct: 262 DHSPP 266
>01_03_0285 -
14604499-14604608,14604692-14605203,14605339-14605418,
14605597-14605699,14605759-14605907,14606088-14606180,
14606289-14606675,14607690-14608124,14608198-14608311,
14608405-14608453,14608684-14608843,14608941-14609499
Length = 916
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Frame = +2
Query: 98 SIQHIRTAT-GLSAQGVNF-GPDREDCSTNSGRFLLHLGNLYIGFELGSSSFIMPSARAA 271
+IQ +R G S G F G S+ SG+ L + G ++ SSS PS +A
Sbjct: 66 AIQEVRGVDEGGSGHGTGFDGLPLVSPSSKSGKLTSKLRQVTNGLKMKSSSRKAPSPQAQ 125
Query: 272 GCNARQRTRFGRQSLRK*CPGSG*AFATSKCPRFAWSTAHAVFS 403
R R R R G F T+K W+ F+
Sbjct: 126 QSAKRVRKRLDRTKSSAAVALKGLQFVTAKVGNDGWAAVEKRFN 169
>02_01_0597 -
4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 487 TKTNCRKLTTIRMTHQTRV--MRVLSPTVLLKRTTNLKRLDRCSNCLFSLTLMSWRALS 657
+ T C+ L + H+ + +++ ++ TT+ K +D CSNC S +L A+S
Sbjct: 297 SSTGCKDLEAMIKEHEKFIGDQKIIMQSLSKDVTTSKKLVDDCSNCQLSASLRPHDAVS 355
>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
Length = 504
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 487 TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSNCLFSLTL 636
T T + ++ +R+T R MR+L+ + + + L RC CL L L
Sbjct: 330 TTTVVKGVSVVRLTEAVRTMRILAINMFVLNLAKVIDLMRCFPCLEKLYL 379
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 345 PLPLANAHA-LHGVPPMLSSVLPETSQPSSSRPSLFKDDALN 467
P P A +H H P +L+S+LP PSSS PSL +LN
Sbjct: 2522 PSPYATSHGNQHQRPSILASLLPFVL-PSSSNPSLTAPLSLN 2562
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 72 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 158
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 42 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 152
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 121 GGSDVLYTSEGGYSGFIVIVAIESGW 44
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 339 DEPLPLANAHALHGVPPMLSSVLPE---TSQPSSSRPSLFKDDALNHAESKINED 494
+E P +N ++ +PP +PE T +P SS ++KD+ +S N+D
Sbjct: 265 NEVSPASNDSSIDVLPPREGLEVPESVATVKPGSSTADVYKDEVEEDMDSDKNKD 319
>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -2
Query: 107 AVYF-RRRIFRLHSYCSHRVWLV 42
AV+F R++ RLH +CSH V+++
Sbjct: 1233 AVHFPNRKMRRLHEFCSHSVFVI 1255
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 164 EDCSTNSGRFLLHLGNL 214
EDC G FL HLGNL
Sbjct: 574 EDCDITGGYFLKHLGNL 590
>01_06_1486 -
37709159-37709377,37709558-37709821,37709903-37709995,
37710387-37710581,37710665-37710763,37710884-37711132,
37711264-37711467,37711543-37711602,37711731-37711913,
37712382-37712999,37713101-37713169,37713275-37713853
Length = 943
Score = 27.9 bits (59), Expect = 8.4
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Frame = +3
Query: 30 MEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYR-HRVSTSVQIAKIAALTVVASSFIL 206
+ + + S+A++ +P E S S PPP R R S + + +TV++ S +
Sbjct: 148 VSQREEEKSLASVVKRPML-LDERRSLSPPPPQQRAPRFDLSPYLVLMLVVTVISFSLAI 206
Query: 207 GTFILASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDAL-VADEPLPLANAHALHGV 383
++ A+ SC + +D E +G+D + AD L + + +
Sbjct: 207 WQWMKATVLQEKIRSCCSVSTVDCKTTTEAFKINGQHGSDFINSADWNLASCSRMLVFAI 266
Query: 384 PPML 395
P L
Sbjct: 267 PVFL 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,906,648
Number of Sequences: 37544
Number of extensions: 420113
Number of successful extensions: 1476
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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