Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0323
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62010.1 68416.m06964 expressed protein                             31   0.75 
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi...    31   0.75 
At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1 ...    31   0.99 
At2g11620.1 68415.m01249 hypothetical protein                          31   0.99 
At5g46870.1 68418.m05775 RNA recognition motif (RRM)-containing ...    30   1.3  
At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD...    30   1.7  
At1g27430.1 68414.m03343 GYF domain-containing protein contains ...    29   3.0  
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR...    29   4.0  
At1g44820.1 68414.m05134 aminoacylase, putative / N-acyl-L-amino...    28   5.3  
At5g55690.1 68418.m06943 MADS-box protein (AGL47)                      28   7.0  
At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase, puta...    28   7.0  
At4g12080.1 68417.m01920 DNA-binding family protein contains a A...    28   7.0  
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    27   9.2  
At5g40070.1 68418.m04861 hypothetical protein contains similarit...    27   9.2  

>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 258 QLEQLDAMLDKELALEGRAYGNDALVADE 344
           ++EQ++A L +++ +E   YGN  LV DE
Sbjct: 124 RVEQMEARLKEDILMEASRYGNKILVTDE 152


>At1g01440.1 68414.m00059 extra-large G-protein-related weak
           similarity to extra-large G-protein  (AtXLG1)
           (GI:3201682) [Arabidopsis thaliana]
          Length = 664

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +3

Query: 261 LEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHALHGVPPMLSSVLPE 413
           L +LD++ D  L    R  GN+A V D+P P+   HA HG PP   +  PE
Sbjct: 89  LRKLDSIKDHLL----RGGGNNATVVDQP-PMG-FHAHHGPPPSYYNPYPE 133


>At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1
           like protein identical to SP|Q9S7R5 TWIN SISTER of FT
           protein (TFL1 like protein) {Arabidopsis thaliana};
           contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 175

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 210 TFILASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHAL 374
           T ++    V + S+ HQ E L  ++    A  G A+GN+ +  + P P +  H +
Sbjct: 66  TLVMVDPDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRI 120


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 27  VMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 146
           V+  +   + M  + MKPE PP ++Y   +P P  +   S
Sbjct: 253 VLRYDGNNNGMQGVLMKPEKPPQDLYGQCQPQPQIQRNFS 292


>At5g46870.1 68418.m05775 RNA recognition motif (RRM)-containing
           protein similar to unknown protein (pir||C71447)
          Length = 295

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = +3

Query: 51  DSMATITMKPEY--PPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILA 224
           DS  T+TM P+Y  PP  + S      + +    T   ++       V S  I   F+L 
Sbjct: 68  DSSVTVTMSPDYQLPPDALASIESLKESNKSSSPTREDVSVFRKAEDVVSGMISKGFVLG 127

Query: 225 SSWVAARSSCHQLEQL 272
              +A   S  +  QL
Sbjct: 128 KDAIAKAKSLDEKHQL 143


>At5g13730.1 68418.m01598 RNA polymerase sigma subunit SigD (sigD) /
           sigma-like factor (SIG4) identical to RNA polymerase
           sigma subunit SigD [Arabidopsis thaliana] GI:4972296,
           sigma-like factor [Arabidopsis thaliana] GI:3983260;
           contains Pfam profiles PF04545: Sigma-70, region 4,
           PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
          Length = 419

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 451 KTTHSTMPSPK*TKTNCRKLTTIRMTHQTRVMRVLSPTVLLK 576
           +TTH   PSP  +     KL+T  +   T V RV+  +V++K
Sbjct: 27  RTTHQCQPSPSLSSPFSIKLSTALVCGDTTVDRVVDSSVMIK 68


>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1531

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 457  SSLKRLGREDDGWLVSGNTED 395
            S ++RLG + + W+V G+T+D
Sbjct: 1148 SEIRRLGEDPNSWMVGGSTDD 1168


>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1298

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 120 PPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASS 230
           PP   H +S S+ + KI+   V  SSF+L T  +ASS
Sbjct: 7   PPRQTHYLS-SISLLKISISKVFVSSFLLLTLSMASS 42


>At1g44820.1 68414.m05134 aminoacylase, putative /
           N-acyl-L-amino-acid amidohydrolase, putative similar to
           aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase
           ACY-1)[Homo sapiens] SWISS-PROT:Q03154
          Length = 438

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 102 YSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGTFILASSWVAA 242
           ++T+ P P Y   +S  +  A+   LT     FI G  IL  +W+ +
Sbjct: 39  FNTAHPNPNYTAPISFLINQAQSIGLTTKTIEFISGKPILLITWLGS 85


>At5g55690.1 68418.m06943 MADS-box protein (AGL47) 
          Length = 277

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 493 TNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCS-NCLFSL 630
           ++C K  T++   +    +V  PT+  K  T  K+LD+CS N L+++
Sbjct: 84  SSCTKTYTVQECLEKNNTKVEKPTIATKYPTWDKKLDQCSLNDLYAV 130


>At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase [Phaseolus
           vulgaris][GI:6715257]; neoxanthin cleavage enzyme,
           Lycopersicon esculentum, PATX:E325797
          Length = 595

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 180 TVVASSFILGTFILASSWVAARSSCHQLEQLD-AMLDKELALEGRAYGNDALVADEPLPL 356
           +V +SSF+  TF L  S +  RSS   L +++ A++++   +   +  ND     + L  
Sbjct: 3   SVSSSSFLSSTFSLHHSLLRRRSSSPTLLRINSAVVEERSPITNPSDNNDRRNKPKTLHN 62

Query: 357 ANAHALHGVPPML 395
              H L   PP L
Sbjct: 63  RTNHTLVSSPPKL 75


>At4g12080.1 68417.m01920 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 356

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219 LASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDA-LVADEPLPLANAHALHGVPPML 395
           L  S V   ++   +E +   L K+     R YG D  +VA  P P+++A A   +PP  
Sbjct: 66  LQISTVTTTTTTAAMEGISGGLMKKKRGRPRKYGPDGTVVALSPKPISSAPAPSHLPPPS 125

Query: 396 SSVLPETSQPSSSR 437
           S V+  ++    S+
Sbjct: 126 SHVIDFSASEKRSK 139


>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 27  VMEKEHQPDSMA--TITMKPEYPPSEVYSTSEPPP 125
           + E+E +P  +   T  +KP  PP +  +T  PPP
Sbjct: 222 IEEEESEPKEIQIDTFVVKPSSPPQQPPATPPPPP 256


>At5g40070.1 68418.m04861 hypothetical protein contains similarity
           to hypothetical proteins of [Arabidopsis thaliana]
          Length = 157

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 351 PLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHAESKINE 491
           PLA+ ++   +  ++ S+ P  S+  S  PS F     NH ++ +++
Sbjct: 81  PLADHYSPDQISQLIQSLEPHVSKTQSLNPSQFSLFMYNHGDNTLSQ 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,185,830
Number of Sequences: 28952
Number of extensions: 307126
Number of successful extensions: 1458
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)