Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0319
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    24   1.5  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    24   1.5  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    24   1.5  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    24   1.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.1  

>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 387 KVKNTFPTWKLTSLMRQRIGMETEAKKNTKIINQK*HPHK*RPKSNGTRNNIDGDREK 560
           K +  +  ++ TS  R R   E E  K  KII+   + +K    +N   NN + +  K
Sbjct: 51  KNEREYREYRETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 387 KVKNTFPTWKLTSLMRQRIGMETEAKKNTKIINQK*HPHK*RPKSNGTRNNIDGDREK 560
           K +  +  ++ TS  R R   E E  K  KII+   + +K    +N   NN + +  K
Sbjct: 51  KNEREYREYRETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 387 KVKNTFPTWKLTSLMRQRIGMETEAKKNTKIINQK*HPHK*RPKSNGTRNNIDGDREK 560
           K +  +  ++ TS  R R   E E  K  KII+   + +K    +N   NN + +  K
Sbjct: 51  KNEREYREYRETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 387 KVKNTFPTWKLTSLMRQRIGMETEAKKNTKIINQK*HPHK*RPKSNGTRNNIDGDREK 560
           K +  +  ++ TS  R R   E E  K  KII+   + +K    +N   NN + +  K
Sbjct: 51  KNEREYREYRETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYNNNNYK 108


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 424 LVSFHVGNVFLTFTQFLLNVAVSKEAWLLLSF 329
           ++S H G V  T       +   K+AW+  SF
Sbjct: 167 VISMHDGLVLYTTPSICTALGYLKDAWIGRSF 198


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 424 LVSFHVGNVFLTFTQFLLNVAVSKEAWLLLSF 329
           ++S H G V  T       +   K+AW+  SF
Sbjct: 162 VISMHDGLVLYTTPSICTALGYLKDAWIGRSF 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,136
Number of Sequences: 438
Number of extensions: 2791
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)