Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0319
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53800.1 68418.m06685 expressed protein                             32   0.30 
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    29   2.1  
At5g42240.1 68418.m05142 serine carboxypeptidase S10 family prot...    28   6.6  
At4g14730.1 68417.m02265 transmembrane protein-related low simil...    27   8.7  
At3g12900.1 68416.m01607 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   8.7  
At1g62935.1 68414.m07106 hypothetical protein                          27   8.7  
At1g10330.1 68414.m01163 pentatricopeptide (PPR) repeat-containi...    27   8.7  

>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 25/101 (24%), Positives = 44/101 (43%)
 Frame = +1

Query: 46  RKKIKIKGEEKLDIK*NRETEXXXXXXXXXXXXXXXXXXHWQEIKKSED*EKTG***CQA 225
           R+  K +G+ K D K +R                      + + ++SE  ++      + 
Sbjct: 78  RRSRKDRGKRKSDRKSSRSRRRRRDYSSSSSDSESESESEYSDSEESESEDERR----RR 133

Query: 226 ERRRKKTEEVRQNNRCWRR*STKNQKAKIGKDSCKKREEAK 348
           +R+RK+ EE  +  +  RR   K ++ K  KD  KKR+E K
Sbjct: 134 KRKRKEREEEEKERKRRRREKDKKKRNKSDKDGDKKRKEKK 174


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 220 QAERRRKKTEEVRQNNRCWRR*STKNQKAKIGKDSCKKREE 342
           + ERRRK+ EE R+     RR   + ++ +  +   KKREE
Sbjct: 442 EIERRRKEEEEARKREEAKRREEEEAKRREEEETERKKREE 482


>At5g42240.1 68418.m05142 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II-3 precursor
           (SP:P52711) (CP-MII.3. [Hordeum vulgare]
          Length = 473

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = -1

Query: 665 FFFNLCTVY*QISINCMHKRFSWWCVLSTLCSGCIFFSVA---IDVIP--SPVALRSSFM 501
           F+FNL  V   +  N  H  +SW     ++CSG + +S     ID++P    + L  + +
Sbjct: 321 FYFNLPEVQKALHANRTHLPYSW-----SMCSGVLNYSDIDGNIDMLPILKRIILNKTPI 375

Query: 500 WMLFLIDDFCIFFGFS 453
           W+     D  + FG S
Sbjct: 376 WIFSGDQDSVVPFGGS 391


>At4g14730.1 68417.m02265 transmembrane protein-related low
           similarity to transmembrane protein OTMP [Ovis aries]
           GI:9965379
          Length = 235

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 317 LPIFAFWFLVLYRLQHLLFCLTSSVFFLRLS 225
           LP+   W L+ +  +H + C+  S+F L +S
Sbjct: 76  LPLLLLWPLLAFEKKHPINCIVLSIFTLSIS 106


>At3g12900.1 68416.m01607 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to SP|P10967
           1-aminocyclopropane-1-carboxylate oxidase homolog
           (Protein E8) {Lycopersicon esculentum},
           desacetoxyvindoline-4-hydroxylase [Catharanthus roseus]
           GI:2352812; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 357

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 87  YIQFLFAFYLNLLSGPPHDAVLDCDY 10
           Y +FLF  Y+N   G PHD     D+
Sbjct: 328 YKEFLFQDYMNNFFGQPHDGKKSLDF 353


>At1g62935.1 68414.m07106 hypothetical protein
          Length = 176

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -1

Query: 119 TPLRSVSLFYFISNFSSPFILIFFL 45
           T + ++ LF+F+  F++P +L FFL
Sbjct: 15  TIVSTLMLFFFLRYFNNPLLLFFFL 39


>At1g10330.1 68414.m01163 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 467

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 584 STLCSGCIFFSVAIDVIPSPVALRSSFMWMLFLIDDFCIFFG 459
           S + + C  FSV+  V     AL+  F+W  F+   F  F+G
Sbjct: 91  SLIKAACSSFSVSYGVALHGQALKRGFLWDPFVQTSFVRFYG 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,862,690
Number of Sequences: 28952
Number of extensions: 204345
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)