Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0318
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    50   3e-07
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    28   1.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   6.4  

>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
 Frame = -1

Query: 618 TVGPVAIDADGHIAVATSTGGINGKMVGRIGDTPLIGGGTYAD--DNVG-----GISTTG 460
           T+G + +D +G IAV +S+GG+  K  GRIG +P+ G G + +  DN        ++T+G
Sbjct: 176 TIGVICVDKNGRIAVVSSSGGLLLKPAGRIGSSPIPGHGFWIESFDNKSHSSTCAVATSG 235

Query: 459 HGESILKYCLAHTIIKLMEGGLDADTATRQAVNGMTARL 343
            GE I   C A    +L+    +  ++  + +N    +L
Sbjct: 236 TGEHISNTCFACRSSQLLVSEDNVVSSLNKLINDFHGKL 274


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 258 VKNDKVYYGIEHDQTLEEPL*DNSCNKKPKRIFDIPTLT 142
           +KNDK   GI+  Q LEEP+ +    +     FD P +T
Sbjct: 217 IKNDKEALGIQAQQLLEEPVENLHLIRNIFEKFDSPYIT 255


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 299  TSPFFDNVIAPAVLFKRAVIPF 364
            T+ FF +V+ PA+L   A+IP+
Sbjct: 1620 TNVFFSDVLIPALLAAGAIIPY 1641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,490
Number of Sequences: 5004
Number of extensions: 51808
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)