Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0318
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      29   0.045
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.1  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 29.1 bits (62), Expect = 0.045
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 453 HRDL-LLKSHQHCHQHKYRHQLVACLRYVRP 542
           HRDL + +SH H H H+  +Q    L Y  P
Sbjct: 64  HRDLPIYQSHHHLHHHQVLYQQSPYLMYENP 94


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 426 EPNNTSKLIHRDLLLKSHQHCHQHKYRH 509
           E    SK ++ D     HQ  H H+  H
Sbjct: 794 EDKRLSKSVNGDQSQPPHQQLHHHQSTH 821


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/20 (30%), Positives = 9/20 (45%)
 Frame = -3

Query: 586 PYSCCYKHWWYKWKNGRTYR 527
           P +CC   WW       T++
Sbjct: 197 PATCCTTXWWSXXTVAXTFK 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,618
Number of Sequences: 438
Number of extensions: 3715
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)